Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_023613.1
Length=204815
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 2e-26
>seq2
Length=16759152
Score = 134 bits (148), Expect = 2e-26
Identities = 407/626 (65%), Gaps = 7/626 (1%)
Strand=Plus/Minus
Query 180392 ACAACaaaaaaaaTAGTTTATAAAAATATTCTTAAAGAATTATTATGGATAATGAAAGGT 180451
||||| ||||||| | ||| ||| |||| || |||| ||||| ||| | || |||
Sbjct 13736393 ACAACTAAAAAAACATTTTGGAAAGGTATTGTTGAAGAGTTATTGTGGTTCATTTCTGGT 13736334
Query 180452 TTAACAAATTCTAATTTGTTAAATGATATTGGTGTTAAAGTGTGGAATGATAATGGTTCG 180511
|| ||| | || |||| || || || |||||| | ||| | | || ||
Sbjct 13736333 AGCACTAATGCAAAGGAATTAAGTGCTAGGGGGGTTAAAATTTGGGAAGCAAACGGAAGT 13736274
Query 180512 CGTAAGTTTTTAGATTCTTGTGGATTTCATTTTCGAAAAGAAGGTGATTTAGGACCAATT 180571
| ||||| | ||| | ||||||| | || ||||||| ||||| ||||| ||
Sbjct 13736273 AGAGAGTTTCTCGATAATCTTGGATTTACTGAAAGACAAGAAGGCGATTTGGGACCTGTT 13736214
Query 180572 TATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTGATACCAACTATATC 180631
||||| ||||||||||||||| |||||| ||| | | | ||| || | ||||
Sbjct 13736213 TATGGTTTTCAATGGAGACATTTTGGAGCTACATACAAAGGCGTTGACGCCGATTATAGA 13736154
Query 180632 GGGCAAGGTATAGACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGC 180691
|| |||| || || ||||| |||||| || || ||||| | ||||| |
Sbjct 13736153 GGTGAAGGAATTGATCAATTGGCCCAAGTAATTGATCAAATAAAGACCAATCCTTTTTCA 13736094
Query 180692 CGAAGAATAATCATAGATAGTTGGAATGTATCACAATTACCAGATATGGCTCTTCCACCA 180751
||||||| || || | |||||| ||| | | | |||| | | || |||
Sbjct 13736093 AGAAGAATTATTTTATCTGCATGGAATCCATCTGATCTTGATAAAATGGTTTTGCCTCCA 13736034
Query 180752 TGTCACTGTTTGGTACAATTTTATGTTAGAAATAAAATTTATTTAGATTGCCAATTGTAT 180811
||||| ||| | |||||||||||| | || | | ||| |||||| ||||||
Sbjct 13736033 TGTCATACTTTAGCTCAATTTTATGTTCAAGATGGA---GAATTAAGTTGCCATTTGTAT 13735977
Query 180812 CAAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTCATTTTT- 180870
||| | || ||| | || | ||||| |||| ||| ||||||| || || ||||
Sbjct 13735976 CAACGTAGTGGGGATGTTGGTCTTGGTGTTCCATTTAACATTGCTTCATACTCTCTTTTA 13735917
Query 180871 -GGTATGTGTTCTCTCAAAGTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTG 180929
|| || | | || | ||| || || | | || ||||| |||||||| |||
Sbjct 13735916 ACTCATATGATTGCAAAAGTTTGTGGAA--TAGCTACAGGTGAATTTGTTCACACTATTG 13735859
Query 180930 GGGATGTTCATGTATATTCTAACCATATTGACCAATTAAAAATTCAATTAAGCAGAAACC 180989
| |||| |||| |||| || || ||||| | | ||| ||||||||| | | |
Sbjct 13735858 GAGATGCTCATATATACAAAAATCACATTGATGCACTTAAACTTCAATTAACTCGTGAAC 13735799
Query 180990 CTTACAAGTTTCCAAAAGTAAAATTT 181015
|||| | ||||||| | |||| |||
Sbjct 13735798 CTTATCAATTTCCAACAATAAAGTTT 13735773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 655278894215000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |