Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 >seq2 Length=16759152 Score = 134 bits (148), Expect = 2e-26 Identities = 407/626 (65%), Gaps = 7/626 (1%) Strand=Plus/Minus Query 180392 ACAACaaaaaaaaTAGTTTATAAAAATATTCTTAAAGAATTATTATGGATAATGAAAGGT 180451 ||||| ||||||| | ||| ||| |||| || |||| ||||| ||| | || ||| Sbjct 13736393 ACAACTAAAAAAACATTTTGGAAAGGTATTGTTGAAGAGTTATTGTGGTTCATTTCTGGT 13736334 Query 180452 TTAACAAATTCTAATTTGTTAAATGATATTGGTGTTAAAGTGTGGAATGATAATGGTTCG 180511 || ||| | || |||| || || || |||||| | ||| | | || || Sbjct 13736333 AGCACTAATGCAAAGGAATTAAGTGCTAGGGGGGTTAAAATTTGGGAAGCAAACGGAAGT 13736274 Query 180512 CGTAAGTTTTTAGATTCTTGTGGATTTCATTTTCGAAAAGAAGGTGATTTAGGACCAATT 180571 | ||||| | ||| | ||||||| | || ||||||| ||||| ||||| || Sbjct 13736273 AGAGAGTTTCTCGATAATCTTGGATTTACTGAAAGACAAGAAGGCGATTTGGGACCTGTT 13736214 Query 180572 TATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTGATACCAACTATATC 180631 ||||| ||||||||||||||| |||||| ||| | | | ||| || | |||| Sbjct 13736213 TATGGTTTTCAATGGAGACATTTTGGAGCTACATACAAAGGCGTTGACGCCGATTATAGA 13736154 Query 180632 GGGCAAGGTATAGACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGC 180691 || |||| || || ||||| |||||| || || ||||| | ||||| | Sbjct 13736153 GGTGAAGGAATTGATCAATTGGCCCAAGTAATTGATCAAATAAAGACCAATCCTTTTTCA 13736094 Query 180692 CGAAGAATAATCATAGATAGTTGGAATGTATCACAATTACCAGATATGGCTCTTCCACCA 180751 ||||||| || || | |||||| ||| | | | |||| | | || ||| Sbjct 13736093 AGAAGAATTATTTTATCTGCATGGAATCCATCTGATCTTGATAAAATGGTTTTGCCTCCA 13736034 Query 180752 TGTCACTGTTTGGTACAATTTTATGTTAGAAATAAAATTTATTTAGATTGCCAATTGTAT 180811 ||||| ||| | |||||||||||| | || | | ||| |||||| |||||| Sbjct 13736033 TGTCATACTTTAGCTCAATTTTATGTTCAAGATGGA---GAATTAAGTTGCCATTTGTAT 13735977 Query 180812 CAAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTCATTTTT- 180870 ||| | || ||| | || | ||||| |||| ||| ||||||| || || |||| Sbjct 13735976 CAACGTAGTGGGGATGTTGGTCTTGGTGTTCCATTTAACATTGCTTCATACTCTCTTTTA 13735917 Query 180871 -GGTATGTGTTCTCTCAAAGTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTG 180929 || || | | || | ||| || || | | || ||||| |||||||| ||| Sbjct 13735916 ACTCATATGATTGCAAAAGTTTGTGGAA--TAGCTACAGGTGAATTTGTTCACACTATTG 13735859 Query 180930 GGGATGTTCATGTATATTCTAACCATATTGACCAATTAAAAATTCAATTAAGCAGAAACC 180989 | |||| |||| |||| || || ||||| | | ||| ||||||||| | | | Sbjct 13735858 GAGATGCTCATATATACAAAAATCACATTGATGCACTTAAACTTCAATTAACTCGTGAAC 13735799 Query 180990 CTTACAAGTTTCCAAAAGTAAAATTT 181015 |||| | ||||||| | |||| ||| Sbjct 13735798 CTTATCAATTTCCAACAATAAAGTTT 13735773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655278894215000