Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_023615.1
Length=196456
Score E
Sequences producing significant alignments: (Bits) Value
seq2 123 3e-23
seq13 102 1e-16
seq14 89.7 6e-13
>seq2
Length=16759152
Score = 123 bits (136), Expect = 3e-23
Identities = 421/652 (65%), Gaps = 13/652 (2%)
Strand=Plus/Minus
Query 171543 ATTTGATTTAAGTAGTGGAACTATACCATTACTTACTACaaaaaaaaTTGTATATACTAA 171602
|||| ||||| | ||||| || || ||| | || || ||||||| | | |
Sbjct 13736427 ATTTATTTTAATTTTAGGAACAATGCCCTTAATAACAACTAAAAAAACATTTTGGAAAGG 13736368
Query 171603 TATCCTTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGA 171662
||| || |||| | || ||| | ||| ||| ||| || |||| |||||| ||
Sbjct 13736367 TATTGTTGAAGAGTTATTGTGGTTCATTTCTGGTAGCACTAATGCAAAGGAATTAAGTGC 13736308
Query 171663 TATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTT 171722
|| || |||||| ||||| | | || || | | || ||| | ||| || ||
Sbjct 13736307 TAGGGGGGTTAAAATTTGGGAAGCAAACGGAAGTAGAGAGTTTCTCGATAATCTTGGATT 13736248
Query 171723 TACTGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGG 171782
|||||||||| ||||||| ||||| || || ||||||| ||||||||||||||| ||
Sbjct 13736247 TACTGAAAGACAAGAAGGCGATTTGGGACCTGTTTATGGTTTTCAATGGAGACATTTTGG 13736188
Query 171783 GGCTCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCA 171842
||| ||| | | | | | | ||||| | ||| ||||| | || ||||| ||
Sbjct 13736187 AGCTACATACAAAGGCGTTGACGCCGATTATAGAGGTGAAGGAATTGATCAATTGGCCCA 13736128
Query 171843 AACTATTAATACTTTACAAAACAACCC---AGAAAGTAGAAGGATGTTAATTGATAGTTG 171899
| ||| || || | | ||| || ||| |||| || ||| || ||
Sbjct 13736127 AGTAATTGATCAAATAAAGACCAATCCTTTTTCAAGAAGAATTATTTTATCTG---CATG 13736071
Query 171900 GAATGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTA 171959
|||| | || | ||||||||||||||| | ||||| || || |||||||| ||||||||
Sbjct 13736070 GAATCCATCTGATCTTGATAAAATGGTTTTGCCTCCATGTCATACTTTAGCTCAATTTTA 13736011
Query 171960 TGTCAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATT 172019
||| || | | ||| ||| || || |||||| | | ||| | || |
Sbjct 13736010 TGT---TCAAGATGGAGAATTAAGTTGCCATTTGTATCAACGTAGTGGGGATGTTGGTCT 13735954
Query 172020 GGGGGTACCTTATAATATTGGATTTTATTCATTTTTAATACTTGTGTTAAGTAAA--TGG 172077
|| || || | ||| |||| | || || |||||| | | || | ||| | |
Sbjct 13735953 TGGTGTTCCATTTAACATTGCTTCATACTCTCTTTTAACTCATATGATTGCAAAAGTTTG 13735894
Query 172078 TGCAATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAAT 172137
|| || || || |||| | ||| |||| ||| ||||||||| ||| | || ||||
Sbjct 13735893 TGGAA--TAGCTACAGGTGAATTTGTTCACACTATTGGAGATGCTCATATATACAAAAAT 13735836
Query 172138 CATGTTGAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAA 172189
|| |||| | | || ||||||||| | |||| ||| |||||||
Sbjct 13735835 CACATTGATGCACTTAAACTTCAATTAACTCGTGAACCTTATCAATTTCCAA 13735784
Score = 93.3 bits (102), Expect = 5e-14
Identities = 179/256 (70%), Gaps = 16/256 (6%)
Strand=Plus/Minus
Query 193347 ATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCAT 193406
|||| | | || |||| |||||| || | ||||| |||||| |||||| ||||||
Sbjct 5488677 ATTTATTTTGGACCAATTTATTATCAAAAGTTAAAACATATGGTTTTGGATAAGATGCAT 5488618
Query 193407 GCTAGAAGTCATGGGCA--AGT-GACTACTTTACATCGACAACCAAATTGTGGTCGTTCT 193463
|||||| ||| | | | ||| | | || ||| || ||||||| ||| | ||
Sbjct 5488617 GCTAGA--TCAAGAGGACCAGTTGCCGTATTGACA-CGTCAACCAACAGAGGGTAGAGCT 5488561
Query 193464 CAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCT 193523
| | ||| ||||||||||| ||||||||||||| ||| ||| || ||| |||| ||
Sbjct 5488560 CGTGATGGTGGTTTAAGATTAGGAGAAATGGAAAGAGATTGTCTTATAGCATATGGAGC- 5488502
Query 193524 ACTCAATTCT-TAAATGAAA----GAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATG 193578
||||| || | |||| || |||| || | |||||||| |||||||| ||||
Sbjct 5488501 -ATCAATGCTATTAATGGAACGGTTAATGGTT---TCTTCTGATCAATTTCAAGTTGATG 5488446
Query 193579 TTTGCACAGAATGTGG 193594
| || | | ||||||
Sbjct 5488445 TATGTTCTGTATGTGG 5488430
Score = 86.0 bits (94), Expect = 8e-12
Identities = 129/180 (72%), Gaps = 4/180 (2%)
Strand=Plus/Minus
Query 165161 TTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAAC 165220
||||||||||||||||| || ||| | ||| | | ||| | |||||||| |
Sbjct 1000801 TTAAAGTTGCTCAATTAGCAGGAGCTGTAGGAGAGATGTCCGCTTACCATCATGGTGAGC 1000742
Query 165221 AAAATTT-ATG-TGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT 165278
|| ||| ||| ||| | || ||||| || || || || | |||||| ||||||| ||
Sbjct 1000741 AATCTTTGATGATGACA--ATTATTAATTTGGCTCAGGACTATGTTGGATCAAATAACAT 1000684
Query 165279 AGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 165338
||| | |||| ||||||||||||||| ||| | ||||||| |||||||||||
Sbjct 1000683 TAATTTATTGTTACCTATTGGTCAATTTGGTACTAGACTTCAAGGAGGAAAAGATTCTGC 1000624
Score = 86.0 bits (94), Expect = 8e-12
Identities = 129/180 (72%), Gaps = 4/180 (2%)
Strand=Plus/Minus
Query 165161 TTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAAC 165220
||||||||||||||||| || ||| | ||| | | ||| | |||||||| |
Sbjct 5554909 TTAAAGTTGCTCAATTAGCAGGAGCTGTAGGAGAGATGTCCGCTTACCATCATGGTGAGC 5554850
Query 165221 AAAATTT-ATG-TGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT 165278
|| ||| ||| ||| | || ||||| || || || || | |||||| ||||||| ||
Sbjct 5554849 AATCTTTGATGATGACA--ATTATTAATTTGGCTCAGGACTATGTTGGATCAAATAACAT 5554792
Query 165279 AGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 165338
||| | |||| ||||||||||||||| ||| | ||||||| |||||||||||
Sbjct 5554791 TAATTTATTGTTACCTATTGGTCAATTTGGTACTAGACTTCAAGGAGGAAAAGATTCTGC 5554732
>seq13
Length=859544
Score = 102 bits (112), Expect = 1e-16
Identities = 143/195 (73%), Gaps = 12/195 (6%)
Strand=Plus/Minus
Query 50320 GATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGT 50379
|||| ||||| ||| |||| || | |||||| | ||||||||| |||||| || ||
Sbjct 704154 GATGATGATGTTGTTTTATTTAACCGTCAACCATCTCTTCATAAAATTTCTAT--AATGT 704097
Query 50380 TTTAAAGTTAAAA--TTCAACCAGTAAAAACATTTAA----AATGAATTTAGCTATGACT 50433
| | || ||| || |||| || ||| ||| ||||||| | || ||| |
Sbjct 704096 CTCATAGAGCAAAGGTTGTTCCAGGAAGAACTTTTCGTTTTAATGAATGT-GC-ATG--T 704041
Query 50434 AAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATAT 50493
| | |||| ||||||||||||||||| |||||||||||||||||| | |||||| | |||
Sbjct 704040 ACACCATACAATGCTGATTTTGATGGTGATGAAATGAATTTACATTTACCTCAAACTTAT 703981
Query 50494 GGAGCTACTGCTGAA 50508
| ||| | ||||||
Sbjct 703980 GAAGCAAAAGCTGAA 703966
>seq14
Length=507912
Score = 89.7 bits (98), Expect = 6e-13
Identities = 130/184 (71%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 50306 AAAGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 50365
||||||| ||| ||||||||| | | | || ||| | |||||||||||||| |||
Sbjct 422289 AAAGACATATGACTGATGGTGATATTATTGTTTTTAATCGTCAACCAACACTTCACAAAA 422230
Query 50366 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAG 50425
|||| | || ||||||| || ||| ||||||| |||||| |
Sbjct 422229 TGAGTATGATGGGGCATAGAGTTAAAGTTTTACCTTGGTCAACATTTCGTATGAATCTTT 422170
Query 50426 CTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTC 50485
|| | || | | |||||||||||||||||||| |||||||||||| | ||| | ||||
Sbjct 422169 CTGTAACAACTCCTTATAATGCTGATTTTGATGGTGATGAAATGAATCTTCATTTACCTC 422110
Query 50486 AATC 50489
||||
Sbjct 422109 AATC 422106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628530139353600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |