Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq2 123 3e-23 seq13 102 1e-16 seq14 89.7 6e-13 >seq2 Length=16759152 Score = 123 bits (136), Expect = 3e-23 Identities = 421/652 (65%), Gaps = 13/652 (2%) Strand=Plus/Minus Query 171543 ATTTGATTTAAGTAGTGGAACTATACCATTACTTACTACaaaaaaaaTTGTATATACTAA 171602 |||| ||||| | ||||| || || ||| | || || ||||||| | | | Sbjct 13736427 ATTTATTTTAATTTTAGGAACAATGCCCTTAATAACAACTAAAAAAACATTTTGGAAAGG 13736368 Query 171603 TATCCTTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGA 171662 ||| || |||| | || ||| | ||| ||| ||| || |||| |||||| || Sbjct 13736367 TATTGTTGAAGAGTTATTGTGGTTCATTTCTGGTAGCACTAATGCAAAGGAATTAAGTGC 13736308 Query 171663 TATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTT 171722 || || |||||| ||||| | | || || | | || ||| | ||| || || Sbjct 13736307 TAGGGGGGTTAAAATTTGGGAAGCAAACGGAAGTAGAGAGTTTCTCGATAATCTTGGATT 13736248 Query 171723 TACTGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGG 171782 |||||||||| ||||||| ||||| || || ||||||| ||||||||||||||| || Sbjct 13736247 TACTGAAAGACAAGAAGGCGATTTGGGACCTGTTTATGGTTTTCAATGGAGACATTTTGG 13736188 Query 171783 GGCTCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCA 171842 ||| ||| | | | | | | ||||| | ||| ||||| | || ||||| || Sbjct 13736187 AGCTACATACAAAGGCGTTGACGCCGATTATAGAGGTGAAGGAATTGATCAATTGGCCCA 13736128 Query 171843 AACTATTAATACTTTACAAAACAACCC---AGAAAGTAGAAGGATGTTAATTGATAGTTG 171899 | ||| || || | | ||| || ||| |||| || ||| || || Sbjct 13736127 AGTAATTGATCAAATAAAGACCAATCCTTTTTCAAGAAGAATTATTTTATCTG---CATG 13736071 Query 171900 GAATGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTA 171959 |||| | || | ||||||||||||||| | ||||| || || |||||||| |||||||| Sbjct 13736070 GAATCCATCTGATCTTGATAAAATGGTTTTGCCTCCATGTCATACTTTAGCTCAATTTTA 13736011 Query 171960 TGTCAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATT 172019 ||| || | | ||| ||| || || |||||| | | ||| | || | Sbjct 13736010 TGT---TCAAGATGGAGAATTAAGTTGCCATTTGTATCAACGTAGTGGGGATGTTGGTCT 13735954 Query 172020 GGGGGTACCTTATAATATTGGATTTTATTCATTTTTAATACTTGTGTTAAGTAAA--TGG 172077 || || || | ||| |||| | || || |||||| | | || | ||| | | Sbjct 13735953 TGGTGTTCCATTTAACATTGCTTCATACTCTCTTTTAACTCATATGATTGCAAAAGTTTG 13735894 Query 172078 TGCAATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAAT 172137 || || || || |||| | ||| |||| ||| ||||||||| ||| | || |||| Sbjct 13735893 TGGAA--TAGCTACAGGTGAATTTGTTCACACTATTGGAGATGCTCATATATACAAAAAT 13735836 Query 172138 CATGTTGAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAA 172189 || |||| | | || ||||||||| | |||| ||| ||||||| Sbjct 13735835 CACATTGATGCACTTAAACTTCAATTAACTCGTGAACCTTATCAATTTCCAA 13735784 Score = 93.3 bits (102), Expect = 5e-14 Identities = 179/256 (70%), Gaps = 16/256 (6%) Strand=Plus/Minus Query 193347 ATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCAT 193406 |||| | | || |||| |||||| || | ||||| |||||| |||||| |||||| Sbjct 5488677 ATTTATTTTGGACCAATTTATTATCAAAAGTTAAAACATATGGTTTTGGATAAGATGCAT 5488618 Query 193407 GCTAGAAGTCATGGGCA--AGT-GACTACTTTACATCGACAACCAAATTGTGGTCGTTCT 193463 |||||| ||| | | | ||| | | || ||| || ||||||| ||| | || Sbjct 5488617 GCTAGA--TCAAGAGGACCAGTTGCCGTATTGACA-CGTCAACCAACAGAGGGTAGAGCT 5488561 Query 193464 CAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCT 193523 | | ||| ||||||||||| ||||||||||||| ||| ||| || ||| |||| || Sbjct 5488560 CGTGATGGTGGTTTAAGATTAGGAGAAATGGAAAGAGATTGTCTTATAGCATATGGAGC- 5488502 Query 193524 ACTCAATTCT-TAAATGAAA----GAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATG 193578 ||||| || | |||| || |||| || | |||||||| |||||||| |||| Sbjct 5488501 -ATCAATGCTATTAATGGAACGGTTAATGGTT---TCTTCTGATCAATTTCAAGTTGATG 5488446 Query 193579 TTTGCACAGAATGTGG 193594 | || | | |||||| Sbjct 5488445 TATGTTCTGTATGTGG 5488430 Score = 86.0 bits (94), Expect = 8e-12 Identities = 129/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 165161 TTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAAC 165220 ||||||||||||||||| || ||| | ||| | | ||| | |||||||| | Sbjct 1000801 TTAAAGTTGCTCAATTAGCAGGAGCTGTAGGAGAGATGTCCGCTTACCATCATGGTGAGC 1000742 Query 165221 AAAATTT-ATG-TGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT 165278 || ||| ||| ||| | || ||||| || || || || | |||||| ||||||| || Sbjct 1000741 AATCTTTGATGATGACA--ATTATTAATTTGGCTCAGGACTATGTTGGATCAAATAACAT 1000684 Query 165279 AGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 165338 ||| | |||| ||||||||||||||| ||| | ||||||| ||||||||||| Sbjct 1000683 TAATTTATTGTTACCTATTGGTCAATTTGGTACTAGACTTCAAGGAGGAAAAGATTCTGC 1000624 Score = 86.0 bits (94), Expect = 8e-12 Identities = 129/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 165161 TTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAAC 165220 ||||||||||||||||| || ||| | ||| | | ||| | |||||||| | Sbjct 5554909 TTAAAGTTGCTCAATTAGCAGGAGCTGTAGGAGAGATGTCCGCTTACCATCATGGTGAGC 5554850 Query 165221 AAAATTT-ATG-TGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT 165278 || ||| ||| ||| | || ||||| || || || || | |||||| ||||||| || Sbjct 5554849 AATCTTTGATGATGACA--ATTATTAATTTGGCTCAGGACTATGTTGGATCAAATAACAT 5554792 Query 165279 AGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 165338 ||| | |||| ||||||||||||||| ||| | ||||||| ||||||||||| Sbjct 5554791 TAATTTATTGTTACCTATTGGTCAATTTGGTACTAGACTTCAAGGAGGAAAAGATTCTGC 5554732 >seq13 Length=859544 Score = 102 bits (112), Expect = 1e-16 Identities = 143/195 (73%), Gaps = 12/195 (6%) Strand=Plus/Minus Query 50320 GATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGT 50379 |||| ||||| ||| |||| || | |||||| | ||||||||| |||||| || || Sbjct 704154 GATGATGATGTTGTTTTATTTAACCGTCAACCATCTCTTCATAAAATTTCTAT--AATGT 704097 Query 50380 TTTAAAGTTAAAA--TTCAACCAGTAAAAACATTTAA----AATGAATTTAGCTATGACT 50433 | | || ||| || |||| || ||| ||| ||||||| | || ||| | Sbjct 704096 CTCATAGAGCAAAGGTTGTTCCAGGAAGAACTTTTCGTTTTAATGAATGT-GC-ATG--T 704041 Query 50434 AAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATAT 50493 | | |||| ||||||||||||||||| |||||||||||||||||| | |||||| | ||| Sbjct 704040 ACACCATACAATGCTGATTTTGATGGTGATGAAATGAATTTACATTTACCTCAAACTTAT 703981 Query 50494 GGAGCTACTGCTGAA 50508 | ||| | |||||| Sbjct 703980 GAAGCAAAAGCTGAA 703966 >seq14 Length=507912 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 50306 AAAGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 50365 ||||||| ||| ||||||||| | | | || ||| | |||||||||||||| ||| Sbjct 422289 AAAGACATATGACTGATGGTGATATTATTGTTTTTAATCGTCAACCAACACTTCACAAAA 422230 Query 50366 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAG 50425 |||| | || ||||||| || ||| ||||||| |||||| | Sbjct 422229 TGAGTATGATGGGGCATAGAGTTAAAGTTTTACCTTGGTCAACATTTCGTATGAATCTTT 422170 Query 50426 CTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTC 50485 || | || | | |||||||||||||||||||| |||||||||||| | ||| | |||| Sbjct 422169 CTGTAACAACTCCTTATAATGCTGATTTTGATGGTGATGAAATGAATCTTCATTTACCTC 422110 Query 50486 AATC 50489 |||| Sbjct 422109 AATC 422106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628530139353600