Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 seq2 123 2e-23 >seq1 Length=11693564 Score = 140 bits (154), Expect = 3e-28 Identities = 476/735 (65%), Gaps = 29/735 (4%) Strand=Plus/Plus Query 151099 AAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAttt 151158 ||||||||| || ||||| |||| || || || || ||||| || | |||||| ||||| Sbjct 6013869 AAATGCATCAGCTAAACCCTGAACACCAATACCAATTGGACGGTGTCTCATATTTGATTT 6013928 Query 151159 ttttGCAGTTTCA---ATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCAC 151215 | | || |||| | ||| || ||||| ||||||||||||||||||| | || Sbjct 6013929 TCTGGC---TTCAGGGACAGGATAATAATTGACATCAATAATTTTATTCAAATTTTTAGT 6013985 Query 151216 TACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAG------TATCAT-TA---- 151264 || | ||| ||| || | | ||| |||| ||||| || ||| || Sbjct 6013986 TAGAATTTTAGAAACAACATGAAGTTGTTTGAAATTAAAAGCAGGTTTACCATCTACAAC 6014045 Query 151265 -TTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGC 151323 | | | || |||| | ||||| || ||||||||||||| ||| ||| || || || Sbjct 6014046 TTCAACAAATCTATTAAGAGCAATAGATCCTAGATTACATACAGCAACTTCATCTGGTGC 6014105 Query 151324 GCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTG 151383 ||||||| || ||||| | ||| ||||| ||||| || ||| ||| ||| Sbjct 6014106 ACAATATTCAACAATTTCAGTACATAAATTTGAACATTTAATGGTTCCAAGATTTTGTTG 6014165 Query 151384 ATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTG 151443 ||| ||||| || || ||| || ||||| | ||| || ||||| |||||||| ||| Sbjct 6014166 ATTACTTTTACGATTACAATGATCTTTGTAAACCATATAAGGTGTTCCGGTTTCAATTTG 6014225 Query 151444 AATTTCTATAATGTTTCGCATTAATGTAACCGCGGGC---ATTTGCTCGC-GAAACTGGC 151499 | |||| ||| ||| || | |||| || | ||||| | | | ||| | Sbjct 6014226 ACTTTCACAAATCTTTTGC---CAAATAACTCTGGCCTTTATTTGTTTTCTGTAAC-GTT 6014281 Query 151500 CTTTATCCTCATAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCT 151559 | || ||||| | | || | | ||||| | ||||| | ||||| | || Sbjct 6014282 TCTCATTTTCATACTTGTGATATAATTCCTCAAAAGCCTCACCCCAAGTATCCTCAAGTC 6014341 Query 151560 TAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAA 151619 |||||| |||| || ||||| || ||||| | || || || || |||||||||| Sbjct 6014342 CAGGACATTCGTGGGGGCACATCAAAGACCAATAAGAGTCTTTCTCTACACGTTTCATAA 6014401 Query 151620 ATATATCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAA 151679 ||| ||| |||| ||| | | | | |||||||| ||| | ||||| ||| Sbjct 6014402 ATAAATCAGGAATCCAAAGACCATAAAATAAATCACGAGCTCTTTCTTCTTCAGGGCCTG 6014461 Query 151680 TGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTG 151739 | ||| | | |||| || | |||||| |||||| ||||| | || | | Sbjct 6014462 TATTTTTCTTAAGATCCAAAAATTCTAAAATGTCAGCATGCCATGGTTCTAGATATATAG 6014521 Query 151740 CTTGGGCGCC---TTTTCGCTTGCCACCTTGATCCACGTGACGCACCATATTATTAAAAA 151796 | || || | || || || ||||| || || | || | |||| ||||||| Sbjct 6014522 CAAATGCTCCAGGTCTTTTATTTCCCCCTTGGTCAACATAGCGTGCTGTATTGTTAAAAA 6014581 Query 151797 CTCGCAGCATTGGTA 151811 ||| || |||||||| Sbjct 6014582 CTCTCAACATTGGTA 6014596 >seq2 Length=16759152 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| ||||||| |||||||||||||| || ||||| || Sbjct 10682284 CCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAG 10682225 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| |||||||| || ||| |||||| | ||| ||||| || || Sbjct 10682224 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGA 10682165 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||||||| ||| | | || | ||||| | ||||||||| Sbjct 10682164 ATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACT 10682105 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | ||||| || || || || || || || ||||||||| || Sbjct 10682104 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCATACCT 10682054 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| ||||||| || ||||| ||||| || || || || Sbjct 10683196 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10683137 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| |||||||| || ||| |||||| | ||| ||||| ||||| Sbjct 10683136 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 10683077 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||| ||| ||| | | || | ||||| | ||||||||| Sbjct 10683076 ATTCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACT 10683017 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | ||||| || || || || || || || ||||||||| || Sbjct 10683016 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCATACCT 10682966 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | |||||| |||| || || |||||||| ||||||||||| Sbjct 10682056 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10681997 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| |||||||| |||||| | || | | ||| || || ||||| Sbjct 10681996 AGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGG 10681937 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||||||| ||| | | || | ||||| | ||||| ||| Sbjct 10681936 ATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACT 10681877 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | || || || || || || || || || || |||||| || Sbjct 10681876 TCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCATACCT 10681826 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| ||||| | || ||||| ||||| || || || || Sbjct 10682740 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10682681 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| |||||||| |||||| | || | | ||| ||||| ||||| Sbjct 10682680 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGA 10682621 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| ||| ||| | | || | ||||| | |||||||| Sbjct 10682620 ATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACC 10682561 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | ||| | ||||| || ||||| || || ||||| || |||||| || Sbjct 10682560 TCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCATACCT 10682510 Score = 102 bits (112), Expect = 8e-17 Identities = 462/731 (63%), Gaps = 21/731 (3%) Strand=Plus/Minus Query 151099 AAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAttt 151158 ||||| ||| || | ||||||| || || || || |||||||| | ||| ||| Sbjct 8585779 AAATGTATCAGCAAGTCCTTGAACACCAATTCCAATTGGACGATGCTTAAGATTTGATAA 8585720 Query 151159 ttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCACTAC 151218 || ||| | || || ||||| ||||||||||||||| ||| | | ||| Sbjct 8585719 ACGAGCTTCTTCTAGTGGATAAAAATTAATATCAATAATTTTATTTAAATTTCTTGTTAC 8585660 Query 151219 ATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTA--TCATTATTGATATATT-- 151274 | ||| |||| || | | || ||| ||||| ||| | || || | ||| Sbjct 8585659 AATTTTTGTCACATCATGAAGCATTTTAAAGTCAAATGTAGGTTTTTTTTCTTTTATAAC 8585600 Query 151275 --------TATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCA 151326 |||| | ||||| || |||| |||||| || ||| |||| || | || Sbjct 8585599 AACAAACATATTAAGTGCAATTGATGCTAAATTACAAACAGCAACTTCGCTTGGAGAACA 8585540 Query 151327 ATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATT 151386 |||||| | ||||| | ||| | ||| ||| | ||| ||| |||| |||||| Sbjct 8585539 ATATTGAATAATTTCAGTACATAGATTTGAACATCTAATCGTTCCTAAATTTTGTTGATT 8585480 Query 151387 GCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAAT 151446 ||||| || || ||| || || || | ||| || || | || ||||| ||| Sbjct 8585479 ACTTTTACGATTACAATGATCTTTATAAACCATATATGGAATACCAGTTTCAATCTGAGA 8585420 Query 151447 TTCTATAATGTTTCGC---ATTAATGTAACCGCGGGCATTTGCTCGCGAAACTGGCCTTT 151503 ||| ||| || || | ||| || || ||||||| || ||| || Sbjct 8585419 TTCACAAATTTTCTGCCAAACAAATCTA---GCTTTTATTTGCTTTCGGAACCTTTTTTC 8585363 Query 151504 ATCCTCATAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGG 151563 || ||||| | | || | ||||| | ||||||| | || | || || Sbjct 8585362 ATTTTCATATTTAATATAAAGTTCATCAAATTTATCACCAAAACAATTATCAAGACCTGG 8585303 Query 151564 ACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATAT 151623 ||| || | |||||||||||||||||| | | | |||||| ||||||||||||| Sbjct 8585302 ACATTCATAAGGACACATTAATGACCAATGAAGATCCTGTTCAACACGTTTCATAAATAA 8585243 Query 151624 ATCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTT 151683 ||| |||||||| | | | | | |||||||| ||| | | ||||| || |||| Sbjct 8585242 ATCTGGAACCCAAAGTCCATAAAATAAATCACGAGCTCTTGCTTCTTCTGGACCTGTGTT 8585183 Query 151684 TCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTG 151743 | | | | ||||| ||||| || || |||||| ||||| | ||| | ||| Sbjct 8585182 TTTTCTTAAATCTAAAAATTCCATTATATCAGCATGCCATGGTTCCAAGTAGATTGCAAA 8585123 Query 151744 GGCGCCTTTTCG---CTTGCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCG 151800 || || ||| || ||||| ||||| || | ||| | || ||||| |||| || Sbjct 8585122 TGCCCCAGGTCGTTTATTACCACCCTGATCAACATAACGAGCAGTACTATTATAAACACG 8585063 Query 151801 CAGCATTGGTA 151811 | |||||||| Sbjct 8585062 TAACATTGGTA 8585052 Score = 100 bits (110), Expect = 3e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| ||||| | || ||||| ||||| || || || || Sbjct 10681828 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10681769 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| |||||||| |||||| | || | | || ||||| ||||| Sbjct 10681768 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGA 10681709 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| ||| || | | || | ||||| | || ||||| Sbjct 10681708 ATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACC 10681649 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 137422 |||| ||| | || ||||| ||||| || || ||||| |||||||| | | | |||| Sbjct 10681648 TCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCATGGTTAAAGTTT 10681591 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| ||||||| || || |||||||| ||||||||||| Sbjct 10683424 CCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10683365 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || || || ||||| || || ||| | || | | ||| ||||| ||||| Sbjct 10683364 AGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGG 10683305 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| ||| ||| | | || | ||||| | ||||| ||| Sbjct 10683304 ATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACT 10683245 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | || || || || || || || || || || |||||| || Sbjct 10683244 TCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCATACCT 10683194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488543175582000