Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 3e-28
seq2 123 2e-23
>seq1
Length=11693564
Score = 140 bits (154), Expect = 3e-28
Identities = 476/735 (65%), Gaps = 29/735 (4%)
Strand=Plus/Plus
Query 151099 AAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAttt 151158
||||||||| || ||||| |||| || || || || ||||| || | |||||| |||||
Sbjct 6013869 AAATGCATCAGCTAAACCCTGAACACCAATACCAATTGGACGGTGTCTCATATTTGATTT 6013928
Query 151159 ttttGCAGTTTCA---ATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCAC 151215
| | || |||| | ||| || ||||| ||||||||||||||||||| | ||
Sbjct 6013929 TCTGGC---TTCAGGGACAGGATAATAATTGACATCAATAATTTTATTCAAATTTTTAGT 6013985
Query 151216 TACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAG------TATCAT-TA---- 151264
|| | ||| ||| || | | ||| |||| ||||| || ||| ||
Sbjct 6013986 TAGAATTTTAGAAACAACATGAAGTTGTTTGAAATTAAAAGCAGGTTTACCATCTACAAC 6014045
Query 151265 -TTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGC 151323
| | | || |||| | ||||| || ||||||||||||| ||| ||| || || ||
Sbjct 6014046 TTCAACAAATCTATTAAGAGCAATAGATCCTAGATTACATACAGCAACTTCATCTGGTGC 6014105
Query 151324 GCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTG 151383
||||||| || ||||| | ||| ||||| ||||| || ||| ||| |||
Sbjct 6014106 ACAATATTCAACAATTTCAGTACATAAATTTGAACATTTAATGGTTCCAAGATTTTGTTG 6014165
Query 151384 ATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTG 151443
||| ||||| || || ||| || ||||| | ||| || ||||| |||||||| |||
Sbjct 6014166 ATTACTTTTACGATTACAATGATCTTTGTAAACCATATAAGGTGTTCCGGTTTCAATTTG 6014225
Query 151444 AATTTCTATAATGTTTCGCATTAATGTAACCGCGGGC---ATTTGCTCGC-GAAACTGGC 151499
| |||| ||| ||| || | |||| || | ||||| | | | ||| |
Sbjct 6014226 ACTTTCACAAATCTTTTGC---CAAATAACTCTGGCCTTTATTTGTTTTCTGTAAC-GTT 6014281
Query 151500 CTTTATCCTCATAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCT 151559
| || ||||| | | || | | ||||| | ||||| | ||||| | ||
Sbjct 6014282 TCTCATTTTCATACTTGTGATATAATTCCTCAAAAGCCTCACCCCAAGTATCCTCAAGTC 6014341
Query 151560 TAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAA 151619
|||||| |||| || ||||| || ||||| | || || || || ||||||||||
Sbjct 6014342 CAGGACATTCGTGGGGGCACATCAAAGACCAATAAGAGTCTTTCTCTACACGTTTCATAA 6014401
Query 151620 ATATATCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAA 151679
||| ||| |||| ||| | | | | |||||||| ||| | ||||| |||
Sbjct 6014402 ATAAATCAGGAATCCAAAGACCATAAAATAAATCACGAGCTCTTTCTTCTTCAGGGCCTG 6014461
Query 151680 TGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTG 151739
| ||| | | |||| || | |||||| |||||| ||||| | || | |
Sbjct 6014462 TATTTTTCTTAAGATCCAAAAATTCTAAAATGTCAGCATGCCATGGTTCTAGATATATAG 6014521
Query 151740 CTTGGGCGCC---TTTTCGCTTGCCACCTTGATCCACGTGACGCACCATATTATTAAAAA 151796
| || || | || || || ||||| || || | || | |||| |||||||
Sbjct 6014522 CAAATGCTCCAGGTCTTTTATTTCCCCCTTGGTCAACATAGCGTGCTGTATTGTTAAAAA 6014581
Query 151797 CTCGCAGCATTGGTA 151811
||| || ||||||||
Sbjct 6014582 CTCTCAACATTGGTA 6014596
>seq2
Length=16759152
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||| || | ||| | ||| ||||||| |||||||||||||| || ||||| ||
Sbjct 10682284 CCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAG 10682225
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || ||||| |||||||| || ||| |||||| | ||| ||||| || ||
Sbjct 10682224 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGA 10682165
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| || || ||||||| ||| | | || | ||||| | |||||||||
Sbjct 10682164 ATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACT 10682105
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
|||| ||| | ||||| || || || || || || || ||||||||| ||
Sbjct 10682104 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCATACCT 10682054
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||| || | ||| | ||| ||||||| || ||||| ||||| || || || ||
Sbjct 10683196 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10683137
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || ||||| |||||||| || ||| |||||| | ||| ||||| |||||
Sbjct 10683136 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 10683077
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| ||||| ||| ||| ||| | | || | ||||| | |||||||||
Sbjct 10683076 ATTCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACT 10683017
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
|||| ||| | ||||| || || || || || || || ||||||||| ||
Sbjct 10683016 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCATACCT 10682966
Score = 105 bits (116), Expect = 7e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||| || | ||| | |||||| |||| || || |||||||| |||||||||||
Sbjct 10682056 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10681997
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || ||||| |||||||| |||||| | || | | ||| || || |||||
Sbjct 10681996 AGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGG 10681937
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| || || ||||||| ||| | | || | ||||| | ||||| |||
Sbjct 10681936 ATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACT 10681877
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
|||| ||| | || || || || || || || || || || |||||| ||
Sbjct 10681876 TCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCATACCT 10681826
Score = 105 bits (116), Expect = 7e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||| || | ||| | ||| ||||| | || ||||| ||||| || || || ||
Sbjct 10682740 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10682681
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || ||||| |||||||| |||||| | || | | ||| ||||| |||||
Sbjct 10682680 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGA 10682621
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||||||||| ||| ||| ||| | | || | ||||| | ||||||||
Sbjct 10682620 ATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACC 10682561
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
|| | ||| | ||||| || ||||| || || ||||| || |||||| ||
Sbjct 10682560 TCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCATACCT 10682510
Score = 102 bits (112), Expect = 8e-17
Identities = 462/731 (63%), Gaps = 21/731 (3%)
Strand=Plus/Minus
Query 151099 AAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAttt 151158
||||| ||| || | ||||||| || || || || |||||||| | ||| |||
Sbjct 8585779 AAATGTATCAGCAAGTCCTTGAACACCAATTCCAATTGGACGATGCTTAAGATTTGATAA 8585720
Query 151159 ttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCACTAC 151218
|| ||| | || || ||||| ||||||||||||||| ||| | | |||
Sbjct 8585719 ACGAGCTTCTTCTAGTGGATAAAAATTAATATCAATAATTTTATTTAAATTTCTTGTTAC 8585660
Query 151219 ATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTA--TCATTATTGATATATT-- 151274
| ||| |||| || | | || ||| ||||| ||| | || || | |||
Sbjct 8585659 AATTTTTGTCACATCATGAAGCATTTTAAAGTCAAATGTAGGTTTTTTTTCTTTTATAAC 8585600
Query 151275 --------TATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCA 151326
|||| | ||||| || |||| |||||| || ||| |||| || | ||
Sbjct 8585599 AACAAACATATTAAGTGCAATTGATGCTAAATTACAAACAGCAACTTCGCTTGGAGAACA 8585540
Query 151327 ATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATT 151386
|||||| | ||||| | ||| | ||| ||| | ||| ||| |||| ||||||
Sbjct 8585539 ATATTGAATAATTTCAGTACATAGATTTGAACATCTAATCGTTCCTAAATTTTGTTGATT 8585480
Query 151387 GCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAAT 151446
||||| || || ||| || || || | ||| || || | || ||||| |||
Sbjct 8585479 ACTTTTACGATTACAATGATCTTTATAAACCATATATGGAATACCAGTTTCAATCTGAGA 8585420
Query 151447 TTCTATAATGTTTCGC---ATTAATGTAACCGCGGGCATTTGCTCGCGAAACTGGCCTTT 151503
||| ||| || || | ||| || || ||||||| || ||| ||
Sbjct 8585419 TTCACAAATTTTCTGCCAAACAAATCTA---GCTTTTATTTGCTTTCGGAACCTTTTTTC 8585363
Query 151504 ATCCTCATAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGG 151563
|| ||||| | | || | ||||| | ||||||| | || | || ||
Sbjct 8585362 ATTTTCATATTTAATATAAAGTTCATCAAATTTATCACCAAAACAATTATCAAGACCTGG 8585303
Query 151564 ACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATAT 151623
||| || | |||||||||||||||||| | | | |||||| |||||||||||||
Sbjct 8585302 ACATTCATAAGGACACATTAATGACCAATGAAGATCCTGTTCAACACGTTTCATAAATAA 8585243
Query 151624 ATCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTT 151683
||| |||||||| | | | | | |||||||| ||| | | ||||| || ||||
Sbjct 8585242 ATCTGGAACCCAAAGTCCATAAAATAAATCACGAGCTCTTGCTTCTTCTGGACCTGTGTT 8585183
Query 151684 TCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTG 151743
| | | | ||||| ||||| || || |||||| ||||| | ||| | |||
Sbjct 8585182 TTTTCTTAAATCTAAAAATTCCATTATATCAGCATGCCATGGTTCCAAGTAGATTGCAAA 8585123
Query 151744 GGCGCCTTTTCG---CTTGCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCG 151800
|| || ||| || ||||| ||||| || | ||| | || ||||| |||| ||
Sbjct 8585122 TGCCCCAGGTCGTTTATTACCACCCTGATCAACATAACGAGCAGTACTATTATAAACACG 8585063
Query 151801 CAGCATTGGTA 151811
| ||||||||
Sbjct 8585062 TAACATTGGTA 8585052
Score = 100 bits (110), Expect = 3e-16
Identities = 165/238 (69%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||| || | ||| | ||| ||||| | || ||||| ||||| || || || ||
Sbjct 10681828 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10681769
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || ||||| |||||||| |||||| | || | | || ||||| |||||
Sbjct 10681768 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGA 10681709
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||||||||| ||| ||| || | | || | ||||| | || |||||
Sbjct 10681708 ATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACC 10681649
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 137422
|||| ||| | || ||||| ||||| || || ||||| |||||||| | | | ||||
Sbjct 10681648 TCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCATGGTTAAAGTTT 10681591
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||| || | ||| | ||| ||||||| || || |||||||| |||||||||||
Sbjct 10683424 CCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10683365
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| ||| || || || ||||| || || ||| | || | | ||| ||||| |||||
Sbjct 10683364 AGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGG 10683305
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| || || ||| ||| ||| | | || | ||||| | ||||| |||
Sbjct 10683304 ATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACT 10683245
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
|||| ||| | || || || || || || || || || || |||||| ||
Sbjct 10683244 TCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCATACCT 10683194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488543175582000
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