Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 237 3e-57 seq1 114 3e-20 >seq2 Length=16759152 Score = 237 bits (262), Expect = 3e-57 Identities = 190/229 (83%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||||||||| ||||| || ||||| || ||||| ||||||| Sbjct 10682970 TACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAG 10682911 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || ||||| ||||||||||||||||| |||| ||||||||| ||||||| Sbjct 10682910 AGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAG 10682851 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||||||||| ||||||| ||| ||||| ||||| || ||| |||||| | Sbjct 10682850 GAATTCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAA 10682791 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || || || ||||| || ||||| ||||| |||||||| Sbjct 10682790 CTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742 Score = 224 bits (248), Expect = 2e-53 Identities = 187/229 (82%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| || || |||||||||||||| || ||||| || |||| Sbjct 10682286 TACCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAG 10682227 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || ||||| ||||||||||| |||||||| | ||||||||||||||| | Sbjct 10682226 AGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTG 10682167 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||||||||| |||| ||| ||||| ||||| || || ||||||| Sbjct 10682166 GAATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTA 10682107 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || ||||| ||||| || ||||| ||||| || ||||| Sbjct 10682106 CTTCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058 Score = 224 bits (248), Expect = 2e-53 Identities = 187/229 (82%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||||||||| ||||| || || || || ||||| || |||| Sbjct 10682514 TACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAG 10682455 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || ||||| ||||||||||| |||||||||| ||||||||||||||||| Sbjct 10682454 AGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAG 10682395 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||||||||||||||||| || || || ||||| || ||| ||||| | Sbjct 10682394 GAATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAA 10682335 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || || || ||||| || ||||| ||||| |||||||| Sbjct 10682334 CTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286 Score = 219 bits (242), Expect = 8e-52 Identities = 186/229 (81%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| || || ||||| ||||| || || |||||||| |||| Sbjct 10683198 TACCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAG 10683139 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || ||||| ||||||||||| |||||||| | ||||||||||||||||| Sbjct 10683138 AAAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAG 10683079 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||||||||||| ||| ||||| || || || || ||||||| Sbjct 10683078 GAATTCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTA 10683019 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || ||||| ||||| || ||||| ||||| || ||||| Sbjct 10683018 CTTCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970 Score = 215 bits (238), Expect = 1e-50 Identities = 185/229 (81%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||||||||| ||||| || ||||| || || || ||||||| Sbjct 10682058 TACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAG 10681999 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | || || ||||| ||||||||||||||||| |||| ||||||||| ||||||| Sbjct 10681998 AAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAG 10681939 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||||||||| |||| ||| || || || || || ||| ||||| | Sbjct 10681938 GGATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAA 10681879 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || || || ||||| || ||||| ||||| |||||||| Sbjct 10681878 CTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830 Score = 215 bits (238), Expect = 1e-50 Identities = 185/229 (81%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| || || ||||| ||||| || || |||||||| |||| Sbjct 10682742 TACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAG 10682683 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || ||||| ||||||||||||||||| |||| ||||||||||||||||| Sbjct 10682682 AAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAG 10682623 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || ||||||||||||| ||| ||||| || || || || ||||||| Sbjct 10682622 GAATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTA 10682563 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || ||||| || ||||| ||||| || || |||||||| Sbjct 10682562 CCTCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514 Score = 212 bits (234), Expect = 1e-49 Identities = 191/240 (80%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| || || ||||| ||||| || || |||||||| |||| Sbjct 10681830 TACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAG 10681771 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || ||||| ||||||||||||||||| |||| ||| ||||||||||||| Sbjct 10681770 AAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAG 10681711 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || ||||||||||||| || ||||| ||||| || || ||| |||| Sbjct 10681710 GAATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTA 10681651 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821 | || | ||| || || ||||||||||| ||||| || || || ||||| ||| | ||| Sbjct 10681650 CCTCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCATGGTTAAAGTTT 10681591 Score = 212 bits (234), Expect = 1e-49 Identities = 191/240 (80%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 82571 CATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTAT 82630 ||||||| | |||||| | | ||| ||||| || || ||||| || ||||| || || Sbjct 10683437 CATTTATAAAGAACCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAAT 10683378 Query 82631 ATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTG 82690 || |||||||| || |||| || || || ||||| ||||| ||||| |||| |||||| Sbjct 10683377 GTTGTAATCAGAAAGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTG 10683318 Query 82691 TTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 |||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||| || || Sbjct 10683317 TTGATCTGGAGGGATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTC 10683258 Query 82751 ATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| | ||| || || || ||||| || ||||| ||||| |||||||| Sbjct 10683257 AGATGGTTCAACTTCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || || | |||||| ||||| || |||||||| || |||||||| || ||| Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||| || || || || || || || | ||| || ||||| || || | Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || ||||||||| Sbjct 15965327 GTCTTAACGAAAATCTGCATT 15965307 Score = 89.7 bits (98), Expect = 1e-12 Identities = 80/99 (81%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | ||||| |||||||| || |||||||||||||| || ||||||||||| || Sbjct 14587734 CCTCCACGTAAACGAAGAACTAAATGAAGAGTAGATTCTTTTTGAATATTATAATCTGAA 14587675 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCC-AGCAAAGAT 82681 || |||| || || || ||||||||||| | |||| || Sbjct 14587674 AGTGTTCTTCCATCCTCAAGTTGTTTTCCTATCAAAAAT 14587636 >seq1 Length=11693564 Score = 114 bits (126), Expect = 3e-20 Identities = 197/283 (70%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 144002 AGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGC 144061 ||| ||| | | ||||||||| | || | || || || || |||||||| | || Sbjct 2721772 AGAGCTTCGTAAATGGGCTGACGCATTATTAATTGCTCCATTGGATGCAAATACTATGGC 2721713 Query 144062 AAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATAT 144121 |||||||| ||||| || || ||||||||||| |||||| | || || || ||||||| Sbjct 2721712 TAAAATAGCAAATGGAATTTGTGATAATTTACTTACATCTCTTGTCAGGGCATGGGATAA 2721653 Query 144122 AAATAAACCTCTTATTTTTTGC-CCCGCTATGAATACCCTTATGTGGGAACATCCTATTA 144180 ||||| || ||||||||||| || || |||||||| ||||||||| | | | Sbjct 2721652 TAATAAGCC-ATTATTTTTTGCTCCAGCAATGAATACATGTATGTGGGAGAGTATGTTAA 2721594 Query 144181 CAGAAAAACATATAGATACTTTAAAACAT---ATGGGTTTCATAGAAATAGAATGTATAG 144237 | | | ||||| || | |||||| || ||| | | | |||||| | ||| Sbjct 2721593 CTGTACAACATTTAAAAGTATTAAAAGATTTAATGAGATGGAAAGAAATTCCACCAATAC 2721534 Query 144238 aaaaaaaaCTAGCCTGTGGAGACGTAGGAAATGGTGCTATGGC 144280 ||||| || || ||||| || |||| |||| |||||||| Sbjct 2721533 AAAAAGAATTAATGTGTGGTGATAAAGGATATGGAGCTATGGC 2721491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825501745765