Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq2 237 3e-57
seq1 114 3e-20
>seq2
Length=16759152
Score = 237 bits (262), Expect = 3e-57
Identities = 190/229 (83%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | | ||| ||||||||||| ||||| || ||||| || ||||| |||||||
Sbjct 10682970 TACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAG 10682911
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| |||| || ||||| ||||||||||||||||| |||| ||||||||| |||||||
Sbjct 10682910 AGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAG 10682851
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||||||||||||||| ||||||| ||| ||||| ||||| || ||| |||||| |
Sbjct 10682850 GAATTCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAA 10682791
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | ||| || || || ||||| || ||||| ||||| ||||||||
Sbjct 10682790 CTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 224 bits (248), Expect = 2e-53
Identities = 187/229 (82%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | | ||| ||||| || || |||||||||||||| || ||||| || ||||
Sbjct 10682286 TACCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAG 10682227
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| |||| || ||||| ||||||||||| |||||||| | ||||||||||||||| |
Sbjct 10682226 AGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTG 10682167
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| |||||||||||||||||||| |||| ||| ||||| ||||| || || |||||||
Sbjct 10682166 GAATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTA 10682107
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | ||| || ||||| ||||| || ||||| ||||| || |||||
Sbjct 10682106 CTTCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Score = 224 bits (248), Expect = 2e-53
Identities = 187/229 (82%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | | ||| ||||||||||| ||||| || || || || ||||| || ||||
Sbjct 10682514 TACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAG 10682455
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| |||| || ||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 10682454 AGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAG 10682395
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||||||||||||||||||||||| || || || ||||| || ||| ||||| |
Sbjct 10682394 GAATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAA 10682335
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | ||| || || || ||||| || ||||| ||||| ||||||||
Sbjct 10682334 CTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286
Score = 219 bits (242), Expect = 8e-52
Identities = 186/229 (81%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | | ||| ||||| || || ||||| ||||| || || |||||||| ||||
Sbjct 10683198 TACCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAG 10683139
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| |||| || ||||| ||||||||||| |||||||| | |||||||||||||||||
Sbjct 10683138 AAAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAG 10683079
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||||||||| ||||||||||||| ||| ||||| || || || || |||||||
Sbjct 10683078 GAATTCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTA 10683019
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | ||| || ||||| ||||| || ||||| ||||| || |||||
Sbjct 10683018 CTTCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Score = 215 bits (238), Expect = 1e-50
Identities = 185/229 (81%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | | ||| ||||||||||| ||||| || ||||| || || || |||||||
Sbjct 10682058 TACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAG 10681999
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | || || ||||| ||||||||||||||||| |||| ||||||||| |||||||
Sbjct 10681998 AAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAG 10681939
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| |||||||||||||||||||| |||| ||| || || || || || ||| ||||| |
Sbjct 10681938 GGATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAA 10681879
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | ||| || || || ||||| || ||||| ||||| ||||||||
Sbjct 10681878 CTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 215 bits (238), Expect = 1e-50
Identities = 185/229 (81%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | | ||| ||||| || || ||||| ||||| || || |||||||| ||||
Sbjct 10682742 TACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAG 10682683
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| |||| || ||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 10682682 AAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAG 10682623
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| |||||||| || ||||||||||||| ||| ||||| || || || || |||||||
Sbjct 10682622 GAATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTA 10682563
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | ||| || ||||| || ||||| ||||| || || ||||||||
Sbjct 10682562 CCTCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Score = 212 bits (234), Expect = 1e-49
Identities = 191/240 (80%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | | ||| ||||| || || ||||| ||||| || || |||||||| ||||
Sbjct 10681830 TACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAG 10681771
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| |||| || ||||| ||||||||||||||||| |||| ||| |||||||||||||
Sbjct 10681770 AAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAG 10681711
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| |||||||| || ||||||||||||| || ||||| ||||| || || ||| ||||
Sbjct 10681710 GAATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTA 10681651
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821
| || | ||| || || ||||||||||| ||||| || || || ||||| ||| | |||
Sbjct 10681650 CCTCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCATGGTTAAAGTTT 10681591
Score = 212 bits (234), Expect = 1e-49
Identities = 191/240 (80%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 82571 CATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTAT 82630
||||||| | |||||| | | ||| ||||| || || ||||| || ||||| || ||
Sbjct 10683437 CATTTATAAAGAACCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAAT 10683378
Query 82631 ATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTG 82690
|| |||||||| || |||| || || || ||||| ||||| ||||| |||| ||||||
Sbjct 10683377 GTTGTAATCAGAAAGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTG 10683318
Query 82691 TTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750
|||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||| || ||
Sbjct 10683317 TTGATCTGGAGGGATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTC 10683258
Query 82751 ATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| ||||| | ||| || || || ||||| || ||||| ||||| ||||||||
Sbjct 10683257 AGATGGTTCAACTTCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| ||||| || || | |||||| ||||| || |||||||| || |||||||| || |||
Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||||||||| || || || || || || || | ||| || ||||| || || |
Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || |||||||||
Sbjct 15965327 GTCTTAACGAAAATCTGCATT 15965307
Score = 89.7 bits (98), Expect = 1e-12
Identities = 80/99 (81%), Gaps = 1/99 (1%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| | ||||| |||||||| || |||||||||||||| || ||||||||||| ||
Sbjct 14587734 CCTCCACGTAAACGAAGAACTAAATGAAGAGTAGATTCTTTTTGAATATTATAATCTGAA 14587675
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCC-AGCAAAGAT 82681
|| |||| || || || ||||||||||| | |||| ||
Sbjct 14587674 AGTGTTCTTCCATCCTCAAGTTGTTTTCCTATCAAAAAT 14587636
>seq1
Length=11693564
Score = 114 bits (126), Expect = 3e-20
Identities = 197/283 (70%), Gaps = 5/283 (2%)
Strand=Plus/Minus
Query 144002 AGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGC 144061
||| ||| | | ||||||||| | || | || || || || |||||||| | ||
Sbjct 2721772 AGAGCTTCGTAAATGGGCTGACGCATTATTAATTGCTCCATTGGATGCAAATACTATGGC 2721713
Query 144062 AAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATAT 144121
|||||||| ||||| || || ||||||||||| |||||| | || || || |||||||
Sbjct 2721712 TAAAATAGCAAATGGAATTTGTGATAATTTACTTACATCTCTTGTCAGGGCATGGGATAA 2721653
Query 144122 AAATAAACCTCTTATTTTTTGC-CCCGCTATGAATACCCTTATGTGGGAACATCCTATTA 144180
||||| || ||||||||||| || || |||||||| ||||||||| | | |
Sbjct 2721652 TAATAAGCC-ATTATTTTTTGCTCCAGCAATGAATACATGTATGTGGGAGAGTATGTTAA 2721594
Query 144181 CAGAAAAACATATAGATACTTTAAAACAT---ATGGGTTTCATAGAAATAGAATGTATAG 144237
| | | ||||| || | |||||| || ||| | | | |||||| | |||
Sbjct 2721593 CTGTACAACATTTAAAAGTATTAAAAGATTTAATGAGATGGAAAGAAATTCCACCAATAC 2721534
Query 144238 aaaaaaaaCTAGCCTGTGGAGACGTAGGAAATGGTGCTATGGC 144280
||||| || || ||||| || |||| |||| ||||||||
Sbjct 2721533 AAAAAGAATTAATGTGTGGTGATAAAGGATATGGAGCTATGGC 2721491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981825501745765
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |