Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1 105 1e-17 seq2 95.1 2e-14 >seq1 Length=11693564 Score = 105 bits (116), Expect = 1e-17 Identities = 195/283 (69%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 143021 AGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGC 143080 ||| ||| | | |||||| || | || | || || || || |||||||| | || Sbjct 2721772 AGAGCTTCGTAAATGGGCTGACGCATTATTAATTGCTCCATTGGATGCAAATACTATGGC 2721713 Query 143081 AAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATAT 143140 |||||||| || || || || ||||||||||| |||||| | || || || ||||||| Sbjct 2721712 TAAAATAGCAAATGGAATTTGTGATAATTTACTTACATCTCTTGTCAGGGCATGGGATAA 2721653 Query 143141 AAATAAACCTCTTATTTTTTG-TCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTA 143199 ||||| || |||||||||| ||| || ||||||| ||||||||| | | | Sbjct 2721652 TAATAAGCC-ATTATTTTTTGCTCCAGCAATGAATACATGTATGTGGGAGAGTATGTTAA 2721594 Query 143200 CAGAAAAACATATAGATGCTTTAAAACAT---ATGGGTTTCATAGAAATAGAATGCATAG 143256 | | | ||||| || | | |||||| || ||| | | | |||||| | ||| Sbjct 2721593 CTGTACAACATTTAAAAGTATTAAAAGATTTAATGAGATGGAAAGAAATTCCACCAATAC 2721534 Query 143257 aaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGC 143299 ||||| || || || || || | |||| |||| |||||||| Sbjct 2721533 AAAAAGAATTAATGTGTGGTGATAAAGGATATGGAGCTATGGC 2721491 >seq2 Length=16759152 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || |||||||| ||||| |||||||| | ||||| | Sbjct 10683169 AGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGTTTT 10683110 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| | |||||||||| ||||| | ||| ||||||| ||||||||||||| | Sbjct 10683109 CCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATCTTTGAT 10683050 Query 81753 TTTATATTTTCAATCGT 81769 || | ||| || || || Sbjct 10683049 TTAACATTGTCGATGGT 10683033 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| || || ||||| || ||||| |||||||| | ||||| | Sbjct 10682257 AGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTT 10682198 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| | |||||||||| |||| | ||| |||||||||||||||| |||| | Sbjct 10682197 CCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTTGAT 10682138 Query 81753 TTTATATTTTCAATCGT 81769 || | ||| ||||| || Sbjct 10682137 TTGACATTGTCAATGGT 10682121 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| | ||||| || ||||| || ||||| |||||||| | ||||| | Sbjct 10682485 AGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTT 10682426 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||||| |||||||||| ||||| | ||| ||||||||||||||||||||| Sbjct 10682425 CCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGAC 10682366 Query 81753 TTTATATTTTCAATCGT 81769 || | || ||||| || Sbjct 10682365 TTAACGTTGTCAATAGT 10682349 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || |||||||| ||||| |||||||| | ||||| | Sbjct 10682713 AGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGTTTT 10682654 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| |||| |||||||||| ||||| | ||| |||| || ||||||||||||| | Sbjct 10682653 CCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTTGAT 10682594 Query 81753 TTTATATTTTCAATCGT 81769 || | ||| || || || Sbjct 10682593 TTAACATTGTCGATGGT 10682577 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/137 (73%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || |||||||| ||||| |||||||| | ||||| | Sbjct 10681801 AGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGTTTT 10681742 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| |||| ||| |||||| ||||| | ||| |||| || ||||||||||||| Sbjct 10681741 CCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTTGAC 10681682 Query 81753 TTTATATTTTCAATCGT 81769 || | ||| ||||| || Sbjct 10681681 TTGACATTGTCAATAGT 10681665 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/137 (73%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| | || || || ||||| |||||||| |||||||| | ||||| | Sbjct 10682941 AGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTT 10682882 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| |||| ||||||||| ||||| | ||| ||||||||||||| ||||||| | Sbjct 10682881 CCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTTGAT 10682822 Query 81753 TTTATATTTTCAATCGT 81769 || | ||| ||||| || Sbjct 10682821 TTGACATTGTCAATGGT 10682805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903409675493600