Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 1e-17
seq2 95.1 2e-14
>seq1
Length=11693564
Score = 105 bits (116), Expect = 1e-17
Identities = 195/283 (69%), Gaps = 5/283 (2%)
Strand=Plus/Minus
Query 143021 AGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGC 143080
||| ||| | | |||||| || | || | || || || || |||||||| | ||
Sbjct 2721772 AGAGCTTCGTAAATGGGCTGACGCATTATTAATTGCTCCATTGGATGCAAATACTATGGC 2721713
Query 143081 AAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATAT 143140
|||||||| || || || || ||||||||||| |||||| | || || || |||||||
Sbjct 2721712 TAAAATAGCAAATGGAATTTGTGATAATTTACTTACATCTCTTGTCAGGGCATGGGATAA 2721653
Query 143141 AAATAAACCTCTTATTTTTTG-TCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTA 143199
||||| || |||||||||| ||| || ||||||| ||||||||| | | |
Sbjct 2721652 TAATAAGCC-ATTATTTTTTGCTCCAGCAATGAATACATGTATGTGGGAGAGTATGTTAA 2721594
Query 143200 CAGAAAAACATATAGATGCTTTAAAACAT---ATGGGTTTCATAGAAATAGAATGCATAG 143256
| | | ||||| || | | |||||| || ||| | | | |||||| | |||
Sbjct 2721593 CTGTACAACATTTAAAAGTATTAAAAGATTTAATGAGATGGAAAGAAATTCCACCAATAC 2721534
Query 143257 aaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGC 143299
||||| || || || || || | |||| |||| ||||||||
Sbjct 2721533 AAAAAGAATTAATGTGTGGTGATAAAGGATATGGAGCTATGGC 2721491
>seq2
Length=16759152
Score = 95.1 bits (104), Expect = 2e-14
Identities = 102/137 (74%), Gaps = 11/137 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696
||||| ||||||| || |||||||| ||||| |||||||| | ||||| |
Sbjct 10683169 AGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGTTTT 10683110
Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
||||||| | |||||||||| ||||| | ||| ||||||| ||||||||||||| |
Sbjct 10683109 CCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATCTTTGAT 10683050
Query 81753 TTTATATTTTCAATCGT 81769
|| | ||| || || ||
Sbjct 10683049 TTAACATTGTCGATGGT 10683033
Score = 91.5 bits (100), Expect = 3e-13
Identities = 101/137 (74%), Gaps = 11/137 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696
|||||| |||| || || ||||| || ||||| |||||||| | ||||| |
Sbjct 10682257 AGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTT 10682198
Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
||||||| | |||||||||| |||| | ||| |||||||||||||||| |||| |
Sbjct 10682197 CCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTTGAT 10682138
Query 81753 TTTATATTTTCAATCGT 81769
|| | ||| ||||| ||
Sbjct 10682137 TTGACATTGTCAATGGT 10682121
Score = 91.5 bits (100), Expect = 3e-13
Identities = 101/137 (74%), Gaps = 11/137 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696
||||| | ||||| || ||||| || ||||| |||||||| | ||||| |
Sbjct 10682485 AGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTT 10682426
Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
||||||||| |||||||||| ||||| | ||| |||||||||||||||||||||
Sbjct 10682425 CCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGAC 10682366
Query 81753 TTTATATTTTCAATCGT 81769
|| | || ||||| ||
Sbjct 10682365 TTAACGTTGTCAATAGT 10682349
Score = 91.5 bits (100), Expect = 3e-13
Identities = 101/137 (74%), Gaps = 11/137 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696
||||| ||||||| || |||||||| ||||| |||||||| | ||||| |
Sbjct 10682713 AGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGTTTT 10682654
Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
|||| |||| |||||||||| ||||| | ||| |||| || ||||||||||||| |
Sbjct 10682653 CCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTTGAT 10682594
Query 81753 TTTATATTTTCAATCGT 81769
|| | ||| || || ||
Sbjct 10682593 TTAACATTGTCGATGGT 10682577
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/137 (73%), Gaps = 11/137 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696
||||| ||||||| || |||||||| ||||| |||||||| | ||||| |
Sbjct 10681801 AGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGTTTT 10681742
Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
|||| |||| ||| |||||| ||||| | ||| |||| || |||||||||||||
Sbjct 10681741 CCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTTGAC 10681682
Query 81753 TTTATATTTTCAATCGT 81769
|| | ||| ||||| ||
Sbjct 10681681 TTGACATTGTCAATAGT 10681665
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/137 (73%), Gaps = 11/137 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696
||||| | || || || ||||| |||||||| |||||||| | ||||| |
Sbjct 10682941 AGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTT 10682882
Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
|||| |||| ||||||||| ||||| | ||| ||||||||||||| ||||||| |
Sbjct 10682881 CCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTTGAT 10682822
Query 81753 TTTATATTTTCAATCGT 81769
|| | ||| ||||| ||
Sbjct 10682821 TTGACATTGTCAATGGT 10682805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903409675493600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |