Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq2 315 2e-80
seq1 300 4e-76
seq14 134 3e-26
seq13 122 2e-22
>seq2
Length=16759152
Score = 315 bits (348), Expect = 2e-80
Identities = 584/844 (69%), Gaps = 15/844 (2%)
Strand=Plus/Plus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
|||||||| || | ||| || ||||| | |||||| | | |||||| | || |
Sbjct 8584667 TATTTTGGATTTAGAACACTAGAACGATCATATTTATTAAGAATCAATGATAAAATTGTG 8584726
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
||| | |||||| | ||||| | || || || || | |||||| || | ||||||
Sbjct 8584727 GAAAGACCTCAATATATGTTAATGCGAGTAGCTATAGCAATTCATAGAGAAGATATTGCT 8584786
Query 110424 GCTGTTATTGAATGTTATGATGTAT-TAAGTAAAAAGAAAGCT--ATTCATGCTACTCCT 110480
||| |||||| | || || ||| || || ||| || | | ||||||||| | ||
Sbjct 8584787 TCTGCTATTGA--GACAT-ATTTATATATGTCTAAAAAATGGTTTATTCATGCTTCCCCA 8584843
Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540
|| ||||||| ||||||||| | | | |||||| | || || ||| | || |||
Sbjct 8584844 ACATTATTTAATGCAGGAACTTCTCGTGCACAATTATCGTCATGTTTTTTATTAACAATG 8584903
Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600
||||||||||||||||| |||||||| || | ||| || |||| | ||||| |||
Sbjct 8584904 GCTGATGATTCTATTGAAGGAATTTATGACACTTTGAAACAATGTGCTATAATTTC-AAA 8584962
Query 110601 AACT-CTGGAGGAATTGGTATTCACGTTCA-TGATATTCGCTCAAAAGGAGCAAATATCG 110658
| || | ||||||||||| ||| | || || ||||| | ||| || ||| |
Sbjct 8584963 ATCTGCCGGAGGAATTGG-ATTAAGTATCTCTGGAATTCGTGCTTCTGGAACATTTATTG 8585021
Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718
|| | | || || | |||| ||| | | ||||||||| | || | || ||||
Sbjct 8585022 CAGGAACAAATGGATCATCAAATGGTTTAATACCAATGTTACGTGTTTATAATAGTACTG 8585081
Query 110719 CAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAAC 110775
| ||||| |||| |||||||| | || ||| ||||||| ||||| | ||||
Sbjct 8585082 CTCGTTATGTTGATCAGGGTGGTAATAAACGACCTGGGGCATTTGCAATCTACTTGGAAC 8585141
Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835
| |||||| | |||||| | ||||| ||||| | | ||||| ||| ||||||
Sbjct 8585142 CATGGCATGCTGATATAATGGAATTTTTAGATTTAAGAAAAAACACAGGTCCAGAAGAAG 8585201
Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895
|||||| |||||||||||||||| | | ||| || |||||||||| ||||||||||||
Sbjct 8585202 CAAGAGCTCGTGATTTATTTTATGGACTTTGGGTTCCAGATTTATTTATGAAACGTGTTG 8585261
Query 110896 AAGAAAAT-GGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTA 110954
|| | || ||| ||||| | ||||||||| || | ||| ||||| | ||
Sbjct 8585262 AACAGGATCTTCAT-TGGTCATTAATGTGTCCTTATGAATGTCCAGGTCTTGATAATTGT 8585320
Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA 111014
| ||| | | ||||| || ||||| ||||||||||| ||| | ||| || ||
Sbjct 8585321 TTTGGTGATAAATTTGATGAACTTTATATTAAATATGAAAATGAAAAAAGGTTCCGAAAG 8585380
Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACT 111074
||||| |||| | ||||| ||||| |||||| || |||||||||| | |
Sbjct 8585381 CAAATAAAAGCTAGATTTGTTTGGCAGAAAATTTGTGAATCTCAGATTGAAACTGGTATT 8585440
Query 111075 CCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134
|| ||||| | |||||||||||| |||||| ||| ||||||| |||||||||||
Sbjct 8585441 CCATATATGGTTTATAAAGATCATTGTAATCGTAAAAGTAATCAACAAAATTTAGGAACG 8585500
Query 111135 ATTA 111138
||||
Sbjct 8585501 ATTA 8585504
Score = 145 bits (160), Expect = 2e-29
Identities = 373/562 (66%), Gaps = 7/562 (1%)
Strand=Plus/Plus
Query 131578 TCTT-GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCA 131636
|||| || ||||| |||| |||||| ||||||| ||| ||| | || | ||
Sbjct 14764016 TCTTAGCTTTCTTTGCCGCTTCTGATGGTATTGTTAATGAGAATTTGGTCGAGAGATTTT 14764075
Query 131637 TTCAAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAAT 131696
| ||||| || | ||||| || | | | ||||| || ||| || | |||
Sbjct 14764076 CTAAAGAAGTTCAAATTCCCGAGGCACGTTTCTTCTATGGTTTCCAAATTGCCATGGAAA 14764135
Query 131697 CTATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATA 131756
|||||| || |||||||||||| | | || || | || || | ||| ||||
Sbjct 14764136 ATATTCACAGTGAGATGTATTCAAAACTTATCGAAAC-CTA--TATACGTGACAATGACG 14764192
Query 131757 AAA--AT-AAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAAT 131813
||| || ||| | ||| ||||| || || | ||||| || | ||| ||||| || |
Sbjct 14764193 AAAGAATGAAACTTTTTAATGCTTTAGATGAGTTTCCATTTATCAGAAAAAAAGCTGATT 14764252
Query 131814 GGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTG 131873
||||| | | |||||| ||| | |||| |||| | || || | |||||||
Sbjct 14764253 GGGCTTTAAGATGGATCGCTGATAAGAATGCTACTTTTGGAGAACGAGTTATTGCTTTTG 14764312
Query 131874 CTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGC 131933
| |||||||||||| |||||||| ||| | || | | || |||||||| ||||| |
Sbjct 14764313 CAGCTGTTGAAGGTATCTTCTTTTCTGGTTCATTTGCTTCCATATTTTGGCTGAAGAAAC 14764372
Query 131934 GTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGC 131993
|||| |||||||| ||| | || |||||| |||| || || |||||||| | ||| |
Sbjct 14764373 GTGGTTTGATGCCAGGATTGACACATTCCAATGAATTGATTTCAAGAGATGAGGGATTAC 14764432
Query 131994 ATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATA 132053
| ||| || || | || | ||| | ||| | |||| |||| | ||
Sbjct 14764433 ACCGTGATTTCGCCTGCCTTATGTTTAGTTACCTTGAAAACAAACCATCTGAAGAACGTA 14764492
Query 132054 TTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGC 132113
| ||| || |||| | | ||||||||||| || ||||| | ||||||| ||| | |
Sbjct 14764493 TAAAAGAAATTATTAAAAATGCAGTTGATATTGAAAAGGAATACCTTACAGATGCTCTTC 14764552
Query 132114 CTTGCAATTTGATTGGGATGAA 132135
|| || ||||||| |||||
Sbjct 14764553 CTGTTGATATGATTGGAATGAA 14764574
Score = 127 bits (140), Expect = 5e-24
Identities = 331/493 (67%), Gaps = 34/493 (7%)
Strand=Plus/Plus
Query 58751 GCATCAATATGATTATGGTAAACGTGAGCATCTCCAATAATATGATGAACCAATCCAGGt 58810
|||||||| ||||| | ||| | ||||||||||||||| | ||| || ||| || |
Sbjct 13735825 GCATCAATGTGATTTTTGTATATATGAGCATCTCCAATAGTGTGA---ACAAATTCACCT 13735881
Query 58811 tt---ttttCCTGTCT-TTTTACACATTATATGAAGCAATACGGAGTATGAAACCATATT 58866
| | |||| |||| || || |||||| || | ||||||||| | || ||
Sbjct 13735882 GTAGCTATTCCACAAACTTTTGCA-ATCATATGAGTTAAAAGAGAGTATGAAGCAATGTT 13735940
Query 58867 AAAAGGGATTCCAAGAAACATATCACCACTACGTTGATA-AAATTGTAGATTAAGAGTGT 58925
||| || | |||||| | ||| |||||||||||||| |||| | | |||| |
Sbjct 13735941 AAATGGAACACCAAGACCAACATCCCCACTACGTTGATACAAATGGCAACTTAATTCTC- 13735999
Query 58926 CATCTGCTTCTACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAA 58985
||||| | |||||||||||| |||| ||||||| ||||| | ||||||||||||
Sbjct 13736000 CATCT---TGAACATAAAATTGAGCTAAAGTATGACATGGAGGCAAAACCATTTTATCAA 13736056
Query 58986 TATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAG----GGTCATT-TTT 59040
|||| | |||||||||| |||||||| | | ||| || |||| || |||
Sbjct 13736057 GATCAGATGGATTCCATGCAGATAAAATAATTCTTCTTGAAAAAGGATTGGTCTTTATTT 13736116
Query 59041 AATAAGTTCTTCACAATGTTTTATTTGGTCAAATCCATTA-GTATATTCAGTATTGGCAT 59099
|| | || || || | ||| |||| ||| | | | ||| || ||| |
Sbjct 13736117 GATCAATT----AC-TTGGGCCAATTGATCAATTCCTTCACCTCTAT----AATCGGCGT 13736167
Query 59100 CAA------TGTATTTATCTCCCCAATAACGCCATTGAAAACCATATACAGGTCCAAGAG 59153
||| ||||| || |||| ||| | ||||||||||||||| |||||||| | |
Sbjct 13736168 CAACGCCTTTGTATGTAGCTCCAAAATGTCTCCATTGAAAACCATAAACAGGTCCCAAAT 13736227
Query 59154 TTCCTTCAGGATATTCATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTACCAT 59213
||||| | |||| | || ||| || || ||||| ||||| || || | |
Sbjct 13736228 CGCCTTCTTGTCTTTCAGTAAATCCAAGATTATCGAGAAACTCTCTACTTCCGTTTGCTT 13736287
Query 59214 CCCAAATATGAAC 59226
||||||| | |||
Sbjct 13736288 CCCAAATTTTAAC 13736300
Score = 113 bits (124), Expect = 1e-19
Identities = 112/142 (79%), Gaps = 6/142 (4%)
Strand=Plus/Plus
Query 167779 AAAATAATAACAAAATTGTTTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAA 167838
||| |||||||| || | |||||||| ||| |||||||||||||||||||||||||||
Sbjct 1050151 AAAGTAATAACATAACT---TCTAATGAATTATCACCTCTATCAACATAATCACCTAAAA 1050207
Query 167839 ATATATATTTATTTTGGTTTGAAGGATTATCTAGTTTTTTAAAAATATTCAATAAATCAC 167898
||| | |||| ||||| ||| || || | | |||||||||||| | | |||||||
Sbjct 1050208 ATACAAATTT-TTTTG--TTGGTGGTTTTCCAAATTTTTTAAAAATCCTAAGTAAATCAT 1050264
Query 167899 TAAATTGACCATGTAAATCACC 167920
|| |||| ||||| | ||| ||
Sbjct 1050265 TATATTGTCCATGAATATCTCC 1050286
Score = 104 bits (114), Expect = 6e-17
Identities = 129/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124
||||||||||||||||| ||||| || |||||| | || ||| ||||| ||
Sbjct 5555825 GGTATTCCAAAACTTGAAGATGCTAATGAAGCTGGAACTAAAAATTCTTCCAAATGTACT 5555766
Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184
| ||||||||||||||||||||||| ||| |||| || ||||| | |||| |
Sbjct 5555765 CTTATTCTTACTGAGGGAGATTCTGCTAAGACACTTGCAGTTTCTGGTCTTGGTGTTGTA 5555706
Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGAT 279241
|| || ||| | ||||| |||||||| || | |||||| | | |||| ||||||
Sbjct 5555705 GGACGAGATTATTATGGAGTATTTCCATTGCGTGGTAAAATGTTAAATGTACGTGAT 5555649
Score = 95.1 bits (104), Expect = 3e-14
Identities = 112/149 (75%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 352851 TTGGAGACAAGTTCGCTTCTCGATCTGCTCAAAAAGGAACAATTGGAATGTTGCTCAGTG 352910
|||||||||| |||||||| || || |||||||| ||||| |||||| || ||
Sbjct 8582022 TTGGAGACAAATTCGCTTCAAGACATGGACAAAAAGGTACAATGGGAATGATGTATCGTC 8582081
Query 352911 AAAAGGATATGCCTTTCGACAAAA-ATGGCTTAAAACCTGACATTATTATTAATCCAAAT 352969
|| | ||||||||||| |||||| | || || || ||||| ||||||||||| ||
Sbjct 8582082 AAGAAGATATGCCTTT-TACAAAAGAAGGATTGTCTCCAGACATCATTATTAATCCTCAT 8582140
Query 352970 GCGATTCCCTCTAGAATGACAATAGCTCA 352998
|| |||| ||| | |||||||| | |||
Sbjct 8582141 GCCGTTCCATCTCGTATGACAATTGGTCA 8582169
Score = 89.7 bits (98), Expect = 1e-12
Identities = 126/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124
||||||||||||||||| ||||| || |||||| | || ||| ||||| ||
Sbjct 1001717 GGTATTCCAAAACTTGAAGATGCTAATGAAGCTGGAACTAAAAATTCTTCGAAATGTACT 1001658
Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184
| ||||||||||||||||||| || || |||| || ||||| | |||| |
Sbjct 1001657 CTTATTCTTACTGAGGGAGATTCAGCCAAAACGCTTGCAGTTTCTGGTCTTGGTGTTGTA 1001598
Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGAT 279241
|| |||||| ||||| |||||||| || | |||||| | | |||| ||||||
Sbjct 1001597 GGACGTGATTTTTATGGAGTATTTCCACTACGTGGTAAAATGTTAAATGTACGTGAT 1001541
Score = 84.2 bits (92), Expect = 5e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 279117 AATGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTAT 279176
||||| ||||||||||||| || || || || || |||| | || ||||||| |
Sbjct 1164894 AATGTTCTTTATTTCTTACAGAAGGTGACTCAGCAAAAGCATTGGTTGTTTCTGGTTTTT 1164835
Query 279177 CTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTC 279236
|||| ||||| | ||| ||||| || |||||||||| ||||||| ||||||||||
Sbjct 1164834 CTGTCATTGGAAGAGATTTTTATGGTGTTTTTCCTTTAAAAGGTAAAAGTATTAATGCTC 1164775
Query 279237 G 279237
|
Sbjct 1164774 G 1164774
>seq1
Length=11693564
Score = 300 bits (332), Expect = 4e-76
Identities = 610/892 (68%), Gaps = 19/892 (2%)
Strand=Plus/Minus
Query 110259 AAACTAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAA 110318
||||| ||| | ||||| ||||| | || | |||| | |||||||| || ||
Sbjct 6015026 AAACTTAATTCTGCTATCGTTTATAACAGAGATTTTGATTTCTCTTATTTTGGATTTAAG 6014967
Query 110319 ACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACAC 110378
|| ||||||||| | ||| || | | ||||| | | |||| | || |||||
Sbjct 6014966 ACACTTGAACGTTCATATCTATTAAAAATAAATGGGAAAGTTGCTGAAAGACCACAACAT 6014907
Query 110379 ATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGT 110438
| || | ||||| || |||| |||||||| |||||||||| |||||||||||
Sbjct 6014906 TTATTAATGCGTGTGGCAGTTGGAATTCATGGGGATGATATTAATTCTGTTATTGAAACA 6014847
Query 110439 TATGATGTAT-TAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGG 110497
||||| ||| | | | ||| || |||||| |||| || ||||||| |||||
Sbjct 6014846 TATGAC-TATATGTCTCAGAAGTGGTTTACTCATGCCTCTCCAACATTATTTAATGCAGG 6014788
Query 110498 AACTAATGGAGGACAATTGGCTTCTTGCTTTCTT-CTAGGAATTAACGATGATTCTATTG 110556
||| | | ||| || |||| || |||||| ||| ||| |||||||| ||||
Sbjct 6014787 AACCAGACGTCCACAGCTGTCTTCGTG-TTTCTTACTAACAATGTCTGATGATTCAATTG 6014729
Query 110557 AAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACT-CTGGAGGAATT 110615
||||||| |||||| |||||||| || ||| | ||||| |||| || |||| || |||
Sbjct 6014728 AAGGTATATATGATACTCTTAAACAATGTGCATTAATTTC-AAAATCTGCTGGCGGTATT 6014670
Query 110616 GGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCT 110675
|| | | |||||| |||||| | || || | ||| | | || ||| |
Sbjct 6014669 GGATTGAATGTTCATTGTATTCGTGCTAATGGTTCTTTTATTGGTGGTACAAATGGTACA 6014610
Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735
|| | |||| | | |||||||| ||||| || ||| | || ||| ||||| | |||
Sbjct 6014609 TCTAATGGATTAATACCAATGTTGAGAGTTTTTAACAATACAGCACGCTATGTTGACCAA 6014550
Query 110736 GGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792
|| || ||| ||| ||| |||||||||| ||||| ||||| |||||| | || ||
Sbjct 6014549 GGGGGAAATAAAAGACCTGGAGCATTTGCTATATATCTAGAACCATGGCATGCTGACATT 6014490
Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852
|| ||||| || || ||| |||||| ||| ||||||| ||||||| |||||||||
Sbjct 6014489 TTAGAATTTTTGGATCTTAAGAAAAATACAGGCCCTGAAGAAGAAAGAGCTCGTGATTTA 6014430
Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGC----AT 110908
||||||| | |||||| | |||||||| ||||||||||| ||| || | | ||
Sbjct 6014429 TTTTATGGTCTTTGGATTCCTGATTTATTTATGAAACGTGT---AGAGAAAGACTCTTAT 6014373
Query 110909 GTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTT 110968
|||||| | ||||| || || | |||||| || ||| | || | | ||
Sbjct 6014372 -TGGTCTTTGATGTGCCCCCACGAATGTCCTGGACTTGAGGATACTTGGGGTGAGGCTTT 6014314
Query 110969 TGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC-GCAAACAAATTCCAGCTC 111027
||| || | || | || |||||||| | || | ||| | | |||||||| ||
Sbjct 6014313 TGAGGAATTATATCACAAGTATGAAAATG-AGAAACGTTACAGAAAACAAATAAAGGCCA 6014255
Query 111028 AAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGT 111087
|| ||||| || || |||| ||| ||||||| ||||| |||||||| | |
Sbjct 6014254 GAGTTATTTGGCAAAAGATTTGTGAAAGTCAAATTGAAACCGGAACACCTTATATGGTTT 6014195
Query 111088 ATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139
| ||||||||| |||||| ||| ||||||| ||| | ||||| |||||
Sbjct 6014194 ACAAAGATCATTGTAATCGTAAAAGTAATCAACAAAATCTTGGAACCATTAA 6014143
>seq14
Length=507912
Score = 134 bits (148), Expect = 3e-26
Identities = 260/374 (70%), Gaps = 16/374 (4%)
Strand=Plus/Minus
Query 304776 AAGATGATTTGACATTAAAATACTCTGATATCATTAAATATAACAATTTAATTAAGAAAA 304835
|||||||| | ||| |||| |||||||| |||||| ||||||| |||||| ||||
Sbjct 422811 AAGATGATCTCACACATAAATTATCTGATATTATTAAAACTAACAATC-AATTAAAAAAA 422753
Query 304836 AGTTAACGAGC-GATTCTAATTCACATTTGGTTATTGAT-----TATTCAAACAATTTAC 304889
||| ||| | | | | || | |||| || ||||| |||| || | || |
Sbjct 422752 AGTGAACAAACTGGTGCTGCTAGACAT---GTAATTGAAGAAGATATTAAATTACTT--C 422698
Query 304890 AATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTA-TGCAGGCATCTCAA 304948
|||||||| |||| || || | ||||| ||| |||| ||| ||| | | | |||
Sbjct 422697 AATATCATGTTGCTACTTTTGTTGATAACTCTATTCCTGGTATTGCTGCTGCTA-CACAA 422639
Query 304949 AGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATT 305008
| |||||| | || |||||| ||| | ||| | | ||||||||||| |||||||||
Sbjct 422638 AAATCTGGGCGTCCATTAAAGTCTATCAAACAAAGGTTGAAAGGTAAAGAAGGTCGTATT 422579
Query 305009 CGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGAT 305068
|| || ||| | ||||| ||||||||||||||| ||| | | || || ||||| ||
Sbjct 422578 CGTGGAAATTTGATGGGTAAACGTGTTGATTTTTCTGCTCGTACAGTTATTACACCAGA- 422520
Query 305069 TCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACATT 305127
|| || ||| ||| || | || ||||||| ||||||| ||| | |||||
Sbjct 422519 TCCAAATTTACCACTTGATACTGTTGGTGTTCCAAGAACAATTGCTCAAAATATGACATT 422460
Query 305128 TCCAGAGAAAGTTA 305141
||| |||| ||||
Sbjct 422459 TCCTGAGATTGTTA 422446
Score = 116 bits (128), Expect = 9e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365
|||||| ||| ||| |||| || | || ||| | |||||| |||| || ||||||
Sbjct 422287 AGACATATGACTGATGGTGATATTATTGTTTTTAATCGTCAACCAACACTTCACAAAATG 422228
Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425
|||||||| |||| ||| ||||| ||| || | | |||||||| | ||| | |
Sbjct 422227 AGTATGATGGGGCATAGAGTTAAAGTTTTACCTTGGTCAACATTTCGTATGAATCTTTCT 422168
Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485
| || ||||||||||| ||||||||||| |||||||||||| | ||| ||||||||
Sbjct 422167 GTAACAACTCCTTATAATGCTGATTTTGATGGTGATGAAATGAATCTTCATTTACCTCAA 422108
Query 305486 TC 305487
||
Sbjct 422107 TC 422106
>seq13
Length=859544
Score = 122 bits (134), Expect = 2e-22
Identities = 133/177 (75%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368
||||| |||| ||||| ||| | || || | |||||||| || |||||||| |||
Sbjct 704163 CATTTAGATGATGATGATGTTGTTTTATTTAACCGTCAACCATCTCTTCATAAAATTTCT 704104
Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428
|| ||| |||||| || || || | | ||| || ||||| || |||| | ||||
Sbjct 704103 ATAATGTCTCATAGAGCAAAGGTTGTTCCAGGAAGAACTTTTCGTTTTAATGAATGTGCA 704044
Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485
||||| || || ||||| ||||||||||| |||||||||||| | ||| ||||||||
Sbjct 704043 TGTACACCATACAATGCTGATTTTGATGGTGATGAAATGAATTTACATTTACCTCAA 703987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186810747184735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |