Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2 131 1e-25 >seq2 Length=16759152 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| ||||||||| ||||||||||| || ||||| | | | || || Sbjct 10683406 ACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTCA 10683347 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| |||||||||||||| || | || |||||| | || | ||||| || || | Sbjct 10683346 AGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTGA 10683287 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || || |||| || | ||||| || ||| || |||| || || ||||| Sbjct 10683286 ATCTT-TGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTT 10683228 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||||||| || || ||||| ||||||||| Sbjct 10683227 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10683197 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| |||||||| || ||||| || ||||| || | | | || || Sbjct 10682266 ACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682207 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||||||||||||| ||||| | || |||||| | || | ||||| || || | Sbjct 10682206 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTGA 10682147 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| || || |||| ||| | ||||||| || ||| || |||| || || || || Sbjct 10682146 ATTTT-TGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTT 10682088 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||||||| || || ||||| || |||||| Sbjct 10682087 TCCTGTTAAAGTCTTGACAAAAATTTGCATA 10682057 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || || || ||||| ||||||||| ||||||||||| || || || | | | || || Sbjct 10682038 ACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCA 10681979 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||||||| |||||||| || | || || ||| | || | ||||| || || | Sbjct 10681978 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGA 10681919 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| || || || | ||| | ||||| || ||| || |||| || || ||||| Sbjct 10681918 ATTTT-TGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10681860 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||||||| || || ||||| ||||||||| Sbjct 10681859 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10681829 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| || ||||| || || || || || || || | | | || || Sbjct 10683178 ACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10683119 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||||||||||||| ||||| | || |||||| | || | ||||| ||||| | Sbjct 10683118 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGA 10683059 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || || ||||| ||| | ||||||| || ||| || |||| || || || || Sbjct 10683058 ATCTT-TGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTT 10683000 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||||||| || || ||||| || |||||| Sbjct 10682999 TCCTGTTAAAGTCTTGACAAAAATTTGCATA 10682969 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || || || ||||| ||||||||| || |||||||| ||||| || | | | || || Sbjct 10682950 ACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCA 10682891 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||||||| |||||||| || | || || ||| | || | ||||| || || Sbjct 10682890 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGG 10682831 Query 33661 ATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || || |||| |||| |||||| | ||| || |||| || || ||||| Sbjct 10682830 ATCTT-TGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTT 10682772 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||||||| || || ||||| ||||||||| Sbjct 10682771 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10682741 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || || || ||||| ||| ||||| || ||||| || ||||| || | | | || || Sbjct 10682494 ACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682435 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||||||||||||| || || | || |||||| | || | ||||| || || | Sbjct 10682434 AGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 10682375 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | ||| | ||| | ||||| || ||| || |||| || || ||||| Sbjct 10682374 ATCTT-TGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10682316 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||||||| || || ||||| ||||||||| Sbjct 10682315 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10682285 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| || ||||| || || || || || || || | | | || || Sbjct 10682722 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10682663 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||||||| |||||||| || | || |||||| | || | ||||||||||| | Sbjct 10682662 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10682603 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || || ||||| ||| | ||||||| || ||| || || | ||||| || || Sbjct 10682602 ATCTT-TGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCTT 10682544 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || || || || || ||||||||| Sbjct 10682543 TCCAGTCAAAGTCTTAACGAAAATCTGCATA 10682513 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| || ||||| || || || || || || || | | | || || Sbjct 10681810 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10681751 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||||||| |||||||| || | ||| |||||| | || | ||||||||||| | Sbjct 10681750 AGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10681691 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | |||| ||| | |||||| | || || |||| ||||| ||||| Sbjct 10681690 ATCTT-TGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTT 10681632 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 ||||| || || || || || || ||||| ||| Sbjct 10681631 GCCTGTCAAAGTCTTAACGAAAATTTGCATGGTT 10681598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703459179200