Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq2 131 1e-25
>seq2
Length=16759152
Score = 131 bits (144), Expect = 1e-25
Identities = 157/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|||||||| ||||| ||||||||| ||||||||||| || ||||| | | | || ||
Sbjct 10683406 ACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTCA 10683347
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| ||| |||||||||||||| || | || |||||| | || | ||||| || || |
Sbjct 10683346 AGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTGA 10683287
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| || || || |||| || | ||||| || ||| || |||| || || |||||
Sbjct 10683286 ATCTT-TGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTT 10683228
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
||||||||| || || ||||| |||||||||
Sbjct 10683227 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10683197
Score = 125 bits (138), Expect = 5e-24
Identities = 156/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|||||||| ||||| |||||||| || ||||| || ||||| || | | | || ||
Sbjct 10682266 ACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682207
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| ||||||||||||||| ||||| | || |||||| | || | ||||| || || |
Sbjct 10682206 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTGA 10682147
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
||||| || || |||| ||| | ||||||| || ||| || |||| || || || ||
Sbjct 10682146 ATTTT-TGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTT 10682088
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|||||||| || || ||||| || ||||||
Sbjct 10682087 TCCTGTTAAAGTCTTGACAAAAATTTGCATA 10682057
Score = 116 bits (128), Expect = 2e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|| || || ||||| ||||||||| ||||||||||| || || || | | | || ||
Sbjct 10682038 ACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCA 10681979
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| ||||||||| |||||||| || | || || ||| | || | ||||| || || |
Sbjct 10681978 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGA 10681919
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
||||| || || || | ||| | ||||| || ||| || |||| || || |||||
Sbjct 10681918 ATTTT-TGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10681860
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
||||||||| || || ||||| |||||||||
Sbjct 10681859 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10681829
Score = 116 bits (128), Expect = 2e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|||||||| ||||| || ||||| || || || || || || || | | | || ||
Sbjct 10683178 ACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10683119
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| ||||||||||||||| ||||| | || |||||| | || | ||||| ||||| |
Sbjct 10683118 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGA 10683059
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| || || || ||||| ||| | ||||||| || ||| || |||| || || || ||
Sbjct 10683058 ATCTT-TGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTT 10683000
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|||||||| || || ||||| || ||||||
Sbjct 10682999 TCCTGTTAAAGTCTTGACAAAAATTTGCATA 10682969
Score = 113 bits (124), Expect = 3e-20
Identities = 153/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|| || || ||||| ||||||||| || |||||||| ||||| || | | | || ||
Sbjct 10682950 ACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCA 10682891
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| ||||||||| |||||||| || | || || ||| | || | ||||| || ||
Sbjct 10682890 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGG 10682831
Query 33661 ATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| || || || |||| |||| |||||| | ||| || |||| || || |||||
Sbjct 10682830 ATCTT-TGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTT 10682772
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
||||||||| || || ||||| |||||||||
Sbjct 10682771 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10682741
Score = 107 bits (118), Expect = 1e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|| || || ||||| ||| ||||| || ||||| || ||||| || | | | || ||
Sbjct 10682494 ACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682435
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| ||||||||||||||| || || | || |||||| | || | ||||| || || |
Sbjct 10682434 AGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 10682375
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| || || | ||| | ||| | ||||| || ||| || |||| || || |||||
Sbjct 10682374 ATCTT-TGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10682316
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
||||||||| || || ||||| |||||||||
Sbjct 10682315 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10682285
Score = 107 bits (118), Expect = 1e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|||||||| ||||| || ||||| || || || || || || || | | | || ||
Sbjct 10682722 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10682663
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| ||||||||| |||||||| || | || |||||| | || | ||||||||||| |
Sbjct 10682662 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10682603
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| || || || ||||| ||| | ||||||| || ||| || || | ||||| || ||
Sbjct 10682602 ATCTT-TGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCTT 10682544
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| || || || || || || |||||||||
Sbjct 10682543 TCCAGTCAAAGTCTTAACGAAAATCTGCATA 10682513
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|||||||| ||||| || ||||| || || || || || || || | | | || ||
Sbjct 10681810 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10681751
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| ||||||||| |||||||| || | ||| |||||| | || | ||||||||||| |
Sbjct 10681750 AGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10681691
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| || || | |||| ||| | |||||| | || || |||| ||||| |||||
Sbjct 10681690 ATCTT-TGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTT 10681632
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753
||||| || || || || || || ||||| |||
Sbjct 10681631 GCCTGTCAAAGTCTTAACGAAAATTTGCATGGTT 10681598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703459179200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |