Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq2 122 2e-22
>seq2
Length=16759152
Score = 122 bits (134), Expect = 2e-22
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || | ||||| ||||| || ||| | ||||| ||| ||||||
Sbjct 10681833 CAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCTGAC 10681892
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| |||| || ||| ||||| |||||||| || |||||||| || ||| ||
Sbjct 10681893 ACTATCGACAACGTCAAATCAAAA-ATTCAAGATAAGGAAGGAATCCCTCCAGACCAACA 10681951
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
|||| | || || || ||||| || | ||||||||||||||| | | ||||||||| |
Sbjct 10681952 AAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAACAT 10682011
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| |||||||| ||||||||| | ||| | | |||||
Sbjct 10682012 TCAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCG 10682050
Score = 118 bits (130), Expect = 3e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || | ||||| ||||| || ||| | ||||| ||| ||||||
Sbjct 10682289 CAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCTGAC 10682348
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| |||||||||||| || ||||||||| || || |||
Sbjct 10682349 ACTATTGACAACGTTAAGTCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 10682408
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||| | ||||| |||||||| || | ||||||||||| ||| | | || ||||| ||
Sbjct 10682409 AGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAATATC 10682468
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||| ||||||||| | ||| | | |||||
Sbjct 10682469 CAAAAGGAGTCAACTCTTCACTTAGTTCTTCGTCTTCG 10682506
Score = 118 bits (130), Expect = 3e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || | ||||| ||||| || ||| | ||||| ||| |||||||
Sbjct 10682745 CAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCTGAC 10682804
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || || |||||| ||||| || ||||||||| || ||| |||
Sbjct 10682805 ACCATTGACAATGTCAAATCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAACAA 10682864
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||| | || || || ||||| || | ||||||||||| ||| | | |||||||| ||
Sbjct 10682865 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAATATC 10682924
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| |||||||| ||||||||| | ||| | | |||||
Sbjct 10682925 CAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCG 10682962
Score = 109 bits (120), Expect = 1e-18
Identities = 155/214 (72%), Gaps = 3/214 (1%)
Strand=Plus/Plus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| ||| || | |||||||| || || ||| | ||||| ||| || ||||| |
Sbjct 10682066 TTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCCGACACCAT 10682125
Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296
|| || ||| ||||| |||||||| || ||||||||| || || ||||||
Sbjct 10682126 TGACAATGTCAAATCAAAA-ATTCAAGATAAGGAAGGAATTCCACCAGATCAACAAAGAT 10682184
Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356
| ||||| |||||||| || | ||||||||||| ||| | | || ||||| |||| |
Sbjct 10682185 TGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAATATCCAAA 10682244
Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|||| ||||||||||| | ||| | | |||||
Sbjct 10682245 AAGAATCTACTCTTCATTTGGTTCTTCGTCTTCG 10682278
Score = 105 bits (116), Expect = 2e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || | ||||| ||||| || ||| | ||||| ||| ||||||
Sbjct 10683201 CAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCTGAC 10683260
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || || |||||||||||| || |||||||| || || |||
Sbjct 10683261 ACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAACAA 10683320
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||| | || || ||||||||||| | || |||||||| || | | ||||||||| |
Sbjct 10683321 AGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAACATT 10683380
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| |||||||| |||||||| | ||| | | |||||
Sbjct 10683381 CAAAAAGAGTCAACTCTTCATTTGGTTCTCCGTCTTCG 10683418
Score = 102 bits (112), Expect = 2e-16
Identities = 151/213 (71%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| ||| || | |||||||| || || ||| | ||||| ||| || ||||| |
Sbjct 10682978 TTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCCGACACCAT 10683037
Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297
||| || || |||||||||||| || ||||||||| || || |||||| |
Sbjct 10683038 CGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAACAAAGATT 10683097
Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357
||||| |||||||| || | ||||||||||| ||| | | || || || |||| ||
Sbjct 10683098 GATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAATATCCAAAA 10683157
Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || |||||||| | ||| | | |||||
Sbjct 10683158 GGAATCAACTCTTCATTTGGTTCTTCGTCTTCG 10683190
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
||||| ||||| |||||| | || || || ||| ||||| | || || ||| |
Sbjct 10681626 ACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCCGACACTATTGACAATGTCAAGTCA 10681685
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||||||||| |||||||||||| || || || ||| | || || || |||||
Sbjct 10681686 AAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAGAGATTAATTTTTGCTGGAAAA 10681745
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| | ||||||||||| ||| | | || || || |||| || || || ||||| ||
Sbjct 10681746 CAACTTGAAGATGGAAGAACTCTTTCTGACTATAATATCCAAAAGGAATCAACTCTCCAT 10681805
Query 206374 CTTGTTTTGAGACTTCG 206390
| ||| | | |||||
Sbjct 10681806 TTGGTTCTTCGTCTTCG 10681822
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||| | | ||| | ||||||||||| ||||| |||| ||| ||||||| | |||
Sbjct 10682278 CGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTT 10682219
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
||||||||||| || || |||||||| ||||| | | |||||||
Sbjct 10682218 CTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGA 10682174
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||| | | ||| | ||||||||| ||||| || |||| ||| ||||||| | |||
Sbjct 10682506 CGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTT 10682447
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
||||||||||| || || |||||||| ||||| | | |||||||
Sbjct 10682446 CTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGA 10682402
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| ||||| || |||||| | || || ||| || ||||| |||| || || |
Sbjct 10682538 ACTGGAAAGACCATCACTCTCGAGGTAGAACCATCCGACACCATCGACAATGTTAAATCA 10682597
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||||||||| |||||||||||| || || |||||| | || || || |||||
Sbjct 10682598 AAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATTTTTGCTGGAAAA 10682657
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| | ||||||||||| ||| | | || || || |||| || || || ||||| ||
Sbjct 10682658 CAACTTGAAGATGGAAGAACTCTTTCTGACTATAATATCCAAAAGGAATCAACTCTCCAT 10682717
Query 206374 CTTGTTTTGAGACTTCG 206390
| ||| | | |||||
Sbjct 10682718 TTGGTTCTTCGTCTTCG 10682734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181818755819335
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