Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 122 2e-22 >seq2 Length=16759152 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | ||||| ||||| || ||| | ||||| ||| |||||| Sbjct 10681833 CAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCTGAC 10681892 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||| ||||| |||||||| || |||||||| || ||| || Sbjct 10681893 ACTATCGACAACGTCAAATCAAAA-ATTCAAGATAAGGAAGGAATCCCTCCAGACCAACA 10681951 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | || || || ||||| || | ||||||||||||||| | | ||||||||| | Sbjct 10681952 AAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAACAT 10682011 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||||| ||||||||| | ||| | | ||||| Sbjct 10682012 TCAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCG 10682050 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | ||||| ||||| || ||| | ||||| ||| |||||| Sbjct 10682289 CAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCTGAC 10682348 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||||||| || ||||||||| || || ||| Sbjct 10682349 ACTATTGACAACGTTAAGTCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 10682408 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| |||||||| || | ||||||||||| ||| | | || ||||| || Sbjct 10682409 AGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAATATC 10682468 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| ||||||||| | ||| | | ||||| Sbjct 10682469 CAAAAGGAGTCAACTCTTCACTTAGTTCTTCGTCTTCG 10682506 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | ||||| ||||| || ||| | ||||| ||| ||||||| Sbjct 10682745 CAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCTGAC 10682804 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || |||||| ||||| || ||||||||| || ||| ||| Sbjct 10682805 ACCATTGACAATGTCAAATCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAACAA 10682864 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || ||||| || | ||||||||||| ||| | | |||||||| || Sbjct 10682865 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAATATC 10682924 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||||| ||||||||| | ||| | | ||||| Sbjct 10682925 CAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCG 10682962 Score = 109 bits (120), Expect = 1e-18 Identities = 155/214 (72%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | |||||||| || || ||| | ||||| ||| || ||||| | Sbjct 10682066 TTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCCGACACCAT 10682125 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 || || ||| ||||| |||||||| || ||||||||| || || |||||| Sbjct 10682126 TGACAATGTCAAATCAAAA-ATTCAAGATAAGGAAGGAATTCCACCAGATCAACAAAGAT 10682184 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | ||||| |||||||| || | ||||||||||| ||| | | || ||||| |||| | Sbjct 10682185 TGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAATATCCAAA 10682244 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| ||||||||||| | ||| | | ||||| Sbjct 10682245 AAGAATCTACTCTTCATTTGGTTCTTCGTCTTCG 10682278 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | ||||| ||||| || ||| | ||||| ||| |||||| Sbjct 10683201 CAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCTGAC 10683260 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || |||||||||||| || |||||||| || || ||| Sbjct 10683261 ACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAACAA 10683320 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || ||||||||||| | || |||||||| || | | ||||||||| | Sbjct 10683321 AGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAACATT 10683380 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||||| |||||||| | ||| | | ||||| Sbjct 10683381 CAAAAAGAGTCAACTCTTCATTTGGTTCTCCGTCTTCG 10683418 Score = 102 bits (112), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | |||||||| || || ||| | ||||| ||| || ||||| | Sbjct 10682978 TTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCCGACACCAT 10683037 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || || |||||||||||| || ||||||||| || || |||||| | Sbjct 10683038 CGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAACAAAGATT 10683097 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| |||||||| || | ||||||||||| ||| | | || || || |||| || Sbjct 10683098 GATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAATATCCAAAA 10683157 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||||||| | ||| | | ||||| Sbjct 10683158 GGAATCAACTCTTCATTTGGTTCTTCGTCTTCG 10683190 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| ||||| |||||| | || || || ||| ||||| | || || ||| | Sbjct 10681626 ACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCCGACACTATTGACAATGTCAAGTCA 10681685 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| |||||||||||| || || || ||| | || || || ||||| Sbjct 10681686 AAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAGAGATTAATTTTTGCTGGAAAA 10681745 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||||||||| ||| | | || || || |||| || || || ||||| || Sbjct 10681746 CAACTTGAAGATGGAAGAACTCTTTCTGACTATAATATCCAAAAGGAATCAACTCTCCAT 10681805 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | | ||||| Sbjct 10681806 TTGGTTCTTCGTCTTCG 10681822 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| | ||||||||||| ||||| |||| ||| ||||||| | ||| Sbjct 10682278 CGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTT 10682219 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||| || || |||||||| ||||| | | ||||||| Sbjct 10682218 CTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGA 10682174 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| | ||||||||| ||||| || |||| ||| ||||||| | ||| Sbjct 10682506 CGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTT 10682447 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||| || || |||||||| ||||| | | ||||||| Sbjct 10682446 CTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGA 10682402 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || |||||| | || || ||| || ||||| |||| || || | Sbjct 10682538 ACTGGAAAGACCATCACTCTCGAGGTAGAACCATCCGACACCATCGACAATGTTAAATCA 10682597 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| |||||||||||| || || |||||| | || || || ||||| Sbjct 10682598 AAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATTTTTGCTGGAAAA 10682657 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||||||||| ||| | | || || || |||| || || || ||||| || Sbjct 10682658 CAACTTGAAGATGGAAGAACTCTTTCTGACTATAATATCCAAAAGGAATCAACTCTCCAT 10682717 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | | ||||| Sbjct 10682718 TTGGTTCTTCGTCTTCG 10682734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181818755819335