Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_025422.1
Length=155997
Score E
Sequences producing significant alignments: (Bits) Value
seq2 136 4e-27
>seq2
Length=16759152
Score = 136 bits (150), Expect = 4e-27
Identities = 222/320 (69%), Gaps = 0/320 (0%)
Strand=Plus/Plus
Query 23173 CATCGACATGATTTACATACAAATGAGCATCAACAATTGTATGGACAAATTCACCAGCTT 23232
|||| | |||||| || | ||||||||| |||| || || ||||||||||| |
Sbjct 13735826 CATCAATGTGATTTTTGTATATATGAGCATCTCCAATAGTGTGAACAAATTCACCTGTAG 13735885
Query 23233 TTAGTCCAGTAATCTTTGCAACCATATGAGTCAAAAGAGAATAGAAAGCAATATTGTATG 23292
|| |||| || ||||||| ||||||||| |||||||| || ||||||| || |||
Sbjct 13735886 CTATTCCACAAACTTTTGCAATCATATGAGTTAAAAGAGAGTATGAAGCAATGTTAAATG 13735945
Query 23293 GAATTCCGAGGGCAGTATCTCCAGAACGCTGCAAAAGATGGCAGTTGAGCTTACCTTTAG 23352
||| || || || ||| ||| ||| || | | |||||| | | | || |
Sbjct 13735946 GAACACCAAGACCAACATCCCCACTACGTTGATACAAATGGCAACTTAATTCTCCATCTT 13736005
Query 23353 TCACTCCAAATTGAAATGTCATATGACAAGGAGGTAGCGCCATTTGATCAATTTCACCAG 23412
|| ||||||| | ||||||| ||||| | |||||| ||||| ||| |
Sbjct 13736006 GAACATAAAATTGAGCTAAAGTATGACATGGAGGCAAAACCATTTTATCAAGATCAGATG 13736065
Query 23413 GATTCCAAGCAGTCACAATATGTCTACGCGAATATGGATTGGTCTTGATATCTTCAATTA 23472
||||||| |||| | |||| ||| | ||| | ||||||||||| || | |||||||
Sbjct 13736066 GATTCCATGCAGATAAAATAATTCTTCTTGAAAAAGGATTGGTCTTTATTTGATCAATTA 13736125
Query 23473 CTTTCGCGAGTTGATCAATT 23492
||| || | ||||||||||
Sbjct 13736126 CTTGGGCCAATTGATCAATT 13736145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499061557832200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |