Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_025422.1 Length=155997 Score E Sequences producing significant alignments: (Bits) Value seq2 136 4e-27 >seq2 Length=16759152 Score = 136 bits (150), Expect = 4e-27 Identities = 222/320 (69%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 23173 CATCGACATGATTTACATACAAATGAGCATCAACAATTGTATGGACAAATTCACCAGCTT 23232 |||| | |||||| || | ||||||||| |||| || || ||||||||||| | Sbjct 13735826 CATCAATGTGATTTTTGTATATATGAGCATCTCCAATAGTGTGAACAAATTCACCTGTAG 13735885 Query 23233 TTAGTCCAGTAATCTTTGCAACCATATGAGTCAAAAGAGAATAGAAAGCAATATTGTATG 23292 || |||| || ||||||| ||||||||| |||||||| || ||||||| || ||| Sbjct 13735886 CTATTCCACAAACTTTTGCAATCATATGAGTTAAAAGAGAGTATGAAGCAATGTTAAATG 13735945 Query 23293 GAATTCCGAGGGCAGTATCTCCAGAACGCTGCAAAAGATGGCAGTTGAGCTTACCTTTAG 23352 ||| || || || ||| ||| ||| || | | |||||| | | | || | Sbjct 13735946 GAACACCAAGACCAACATCCCCACTACGTTGATACAAATGGCAACTTAATTCTCCATCTT 13736005 Query 23353 TCACTCCAAATTGAAATGTCATATGACAAGGAGGTAGCGCCATTTGATCAATTTCACCAG 23412 || ||||||| | ||||||| ||||| | |||||| ||||| ||| | Sbjct 13736006 GAACATAAAATTGAGCTAAAGTATGACATGGAGGCAAAACCATTTTATCAAGATCAGATG 13736065 Query 23413 GATTCCAAGCAGTCACAATATGTCTACGCGAATATGGATTGGTCTTGATATCTTCAATTA 23472 ||||||| |||| | |||| ||| | ||| | ||||||||||| || | ||||||| Sbjct 13736066 GATTCCATGCAGATAAAATAATTCTTCTTGAAAAAGGATTGGTCTTTATTTGATCAATTA 13736125 Query 23473 CTTTCGCGAGTTGATCAATT 23492 ||| || | |||||||||| Sbjct 13736126 CTTGGGCCAATTGATCAATT 13736145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499061557832200