Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq2 91.5 1e-13 >seq1 Length=11693564 Score = 95.1 bits (104), Expect = 1e-14 Identities = 172/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 || ||||||||||| | || |||||||| || ||||| | |||| | ||| ||| Sbjct 6013171 GCAGCAGGTTTTGTTCTTAAGTAATACATTCCAGTTTTTAATCCACGTTTCCAACTATGA 6013230 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691 || || ||| | ||||| || | || | || || |||||||| |||||| Sbjct 6013231 AAATGCATTGAACTACAAATGGCATATGATGGTTTAGCAACATGAAGATTAAGCGATTGT 6013290 Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCAT-GCGTTTTGTCTTCAT 146750 ||||||||| ||||| || || || ||||||||||| || | ||||| | || Sbjct 6013291 GATTGATCTATAAAAGCACCACGATCAGCAGCCATCTCAATTATATCTTTTTGAGAT-AT 6013349 Query 146751 TTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAAT 146810 ||||||| | ||||| || || | |||| || |||||| ||| ||| ||||| || Sbjct 6013350 TTCCCAAACAGTTTTATAAAGTTCTTTAATATTAGGTGGAATTTCTTTAATATTTTGGAT 6013409 Query 146811 AGAGCCCTT 146819 ||| || || Sbjct 6013410 AGATCCATT 6013418 >seq2 Length=16759152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | |||||||||||||||||||||| || | || | ||| || Sbjct 10683407 AACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTC 10683348 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || || |||| | | |||| | |||||||||||||| || ||||| ||||| Sbjct 10683347 AAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTG 10683288 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| ||| | | || | ||| || | || || ||||| | || | ||||| Sbjct 10683287 AATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTT 10683228 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || | || || | ||||||||||| Sbjct 10683227 ACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | |||| || ||||| || || ||||| | || | |||||| Sbjct 10681811 AACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10681752 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || ||||| || | | | |||| | ||||||||||||||| || |||||||| || Sbjct 10681751 AAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 10681692 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| || | | || | ||| |||| ||||| || || | || | ||||| Sbjct 10681691 AATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTT 10681632 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||| ||| || | |||||| |||||| Sbjct 10681631 GCCTGTCAAAGTCTTAACGAAAATTTGCATG 10681601 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||||||||||||||||||||| || | || | |||||| || ||||| || | Sbjct 10682025 TTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAG 10681966 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | |||| | ||||| |||||||| || ||||| ||||| ||||||| ||| | Sbjct 10681965 CAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTTTGATTTGA 10681906 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||| || | || || ||||| | || | |||||||| || | || | Sbjct 10681905 CGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCT 10681846 Query 132108 TTATGAAAATCTGCAT 132123 | | ||||||||||| Sbjct 10681845 TAACAAAAATCTGCAT 10681830 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | |||| || ||||| || || ||||| | || | |||||| Sbjct 10682723 AACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10682664 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || ||||| || | | | |||| | |||||||||||||| || |||||||| || Sbjct 10682663 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 10682604 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| ||| | | || | || |||| || || || |||| || | || || Sbjct 10682603 AATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCTT 10682544 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||| || | |||||||||||| Sbjct 10682543 TCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||| || |||||||| | || | |||||| || ||||| |||| Sbjct 10682481 TTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGG 10682422 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||||| | |||||||||||||| || ||||| ||||| ||| ||| || | Sbjct 10682421 CAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGACTTAA 10682362 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||| || | || || ||||| | || | |||||||| || | || | Sbjct 10682361 CGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCT 10682302 Query 132108 TTATGAAAATCTGCAT 132123 | | ||||||||||| Sbjct 10682301 TAACAAAAATCTGCAT 10682286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610395718600