Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq1 95.1 1e-14
seq2 91.5 1e-13
>seq1
Length=11693564
Score = 95.1 bits (104), Expect = 1e-14
Identities = 172/249 (69%), Gaps = 2/249 (1%)
Strand=Plus/Plus
Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631
|| ||||||||||| | || |||||||| || ||||| | |||| | ||| |||
Sbjct 6013171 GCAGCAGGTTTTGTTCTTAAGTAATACATTCCAGTTTTTAATCCACGTTTCCAACTATGA 6013230
Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691
|| || ||| | ||||| || | || | || || |||||||| ||||||
Sbjct 6013231 AAATGCATTGAACTACAAATGGCATATGATGGTTTAGCAACATGAAGATTAAGCGATTGT 6013290
Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCAT-GCGTTTTGTCTTCAT 146750
||||||||| ||||| || || || ||||||||||| || | ||||| | ||
Sbjct 6013291 GATTGATCTATAAAAGCACCACGATCAGCAGCCATCTCAATTATATCTTTTTGAGAT-AT 6013349
Query 146751 TTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAAT 146810
||||||| | ||||| || || | |||| || |||||| ||| ||| ||||| ||
Sbjct 6013350 TTCCCAAACAGTTTTATAAAGTTCTTTAATATTAGGTGGAATTTCTTTAATATTTTGGAT 6013409
Query 146811 AGAGCCCTT 146819
||| || ||
Sbjct 6013410 AGATCCATT 6013418
>seq2
Length=16759152
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||||||||| | |||||||||||||||||||||| || | || | ||| ||
Sbjct 10683407 AACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTC 10683348
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
|| || || |||| | | |||| | |||||||||||||| || ||||| |||||
Sbjct 10683347 AAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTG 10683288
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||| ||| ||| | | || | ||| || | || || ||||| | || | |||||
Sbjct 10683287 AATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTT 10683228
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||| || | || || | |||||||||||
Sbjct 10683227 ACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||||||||| | |||| || ||||| || || ||||| | || | ||||||
Sbjct 10681811 AACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10681752
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
|| ||||| || | | | |||| | ||||||||||||||| || |||||||| ||
Sbjct 10681751 AAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 10681692
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||| ||| || | | || | ||| |||| ||||| || || | || | |||||
Sbjct 10681691 AATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTT 10681632
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| |||| ||| || | |||||| ||||||
Sbjct 10681631 GCCTGTCAAAGTCTTAACGAAAATTTGCATG 10681601
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
|||||||||||||||||||||| || | || | |||||| || ||||| || |
Sbjct 10682025 TTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAG 10681966
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
| | |||| | ||||| |||||||| || ||||| ||||| ||||||| ||| |
Sbjct 10681965 CAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTTTGATTTGA 10681906
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| || | ||| || | || || ||||| | || | |||||||| || | || |
Sbjct 10681905 CGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCT 10681846
Query 132108 TTATGAAAATCTGCAT 132123
| | |||||||||||
Sbjct 10681845 TAACAAAAATCTGCAT 10681830
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||||||||| | |||| || ||||| || || ||||| | || | ||||||
Sbjct 10682723 AACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10682664
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
|| ||||| || | | | |||| | |||||||||||||| || |||||||| ||
Sbjct 10682663 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 10682604
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||| ||| ||| | | || | || |||| || || || |||| || | || ||
Sbjct 10682603 AATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCTT 10682544
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||||| ||| || | ||||||||||||
Sbjct 10682543 TCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
||||||| ||||| || |||||||| | || | |||||| || ||||| ||||
Sbjct 10682481 TTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGG 10682422
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
| |||||| | |||||||||||||| || ||||| ||||| ||| ||| || |
Sbjct 10682421 CAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGACTTAA 10682362
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| || | ||| || | || || ||||| | || | |||||||| || | || |
Sbjct 10682361 CGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCT 10682302
Query 132108 TTATGAAAATCTGCAT 132123
| | |||||||||||
Sbjct 10682301 TAACAAAAATCTGCAT 10682286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476610395718600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |