Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq7 80.6 8e-12 seq15 78.8 3e-11 >seq7 Length=598741 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||||||||||||| |||||||||||||||||| ||| ||||||| | ||||| Sbjct 4575 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCGATCCCGG 4631 >seq15 Length=455407 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||||||||||| |||||||||||||||||| ||| | ||||| | ||||| Sbjct 192997 GTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCCGGTTCGATCCCGG 193054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849576597075