Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq2 118 9e-22
>seq2
Length=16759152
Score = 118 bits (130), Expect = 9e-22
Identities = 533/818 (65%), Gaps = 39/818 (5%)
Strand=Plus/Minus
Query 137278 AGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTG-GCT 137336
||||| |||| ||||||||||| | |||||| |||| | ||| |||||||| | | |
Sbjct 8585862 AGTGCACCATGATAAATAGTTTCAAAAATTTTTATATTAAGATCTTTAGCTTCTGGTGAT 8585803
Query 137337 GTCGTAGGGCATATCCAATATAGCGAAA--GCATCTGCAAGTCCTTGAATACCGATACCG 137394
|| ||| ||| | ||| ||| ||| | ||| ||||||||||||| ||| || ||
Sbjct 8585802 GTGAAAGG--ATACCTCATA-AGCAAAAATGTATCAGCAAGTCCTTGAACACCAATTCCA 8585746
Query 137395 ATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTGCGTCT 137454
|| || | || |||| |||||||| |||| | || |||||||| || ||
Sbjct 8585745 ATTGGACGATGCTTAAGATTTGATAAACGAGCTTCTTCTAGTGGATAAAAATTAATATCA 8585686
Query 137455 ATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCG 137514
|||||| |||| | ||| | || || | | | | ||| | | |||| || || ||
Sbjct 8585685 ATAATTTTATTTAAATTTCTTGTTACAATTTTTGTCACATCATGAAGCATTTTAAAGTCA 8585626
Query 137515 AA-----GCTTTTAGACTGTT-TGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTG 137568
|| | |||| || || | | |||| |||| | ||||| || ||||| ||
Sbjct 8585625 AATGTAGGTTTTTTTTCTTTTATAACAACAAACATATTAAGTGCAATTGATGCTAAATTA 8585566
Query 137569 CATACGGCCGTTTCTGTATTGTCG--CTGTATTGTACAATTTCGGCGCAAAGATTGCTGT 137626
|| || || ||| ||| | | ||||| | |||||| | || |||||
Sbjct 8585565 CAAACAGCAACTTC--GCTTGGAGAACAATATTGAATAATTTCAGTACATAGATTTGAAC 8585508
Query 137627 TTCGGATCACTCCCAAATTCTTTTGATTGTTTTTCTCGTTGAC-GTGATCTTTATATATC 137685
|| ||| ||| ||||| | |||||| |||| || | || ||||||||||| | |
Sbjct 8585507 ATCTAATCGTTCCTAAATTTTGTTGATTACTTTT-ACGATTACAATGATCTTTATAAACC 8585449
Query 137686 ATATACGGAGTTCCGGTTTCGACTTGAGTCTCAACAATTTTTCTGTGA---AGATCCAAC 137742
||||| ||| | || ||||| | |||| || |||| ||||||| | | ||| |
Sbjct 8585448 ATATATGGAATACCAGTTTCAATCTGAGATTC-ACAAATTTTCTGCCAAACAAATCTA-- 8585392
Query 137743 GCCATAATTTGTTCTCTAAACTTGCCTTGAGCTTCAAAACTTTCGTAT--AGCCGTTTAA 137800
|| | ||||| | || ||| | || | |||| | ||| ||| || | ||
Sbjct 8585391 GCTTTTATTTGCTTTCGGAACCTTTTTTCATTTTCATA--TTTAATATAAAGTTCATCAA 8585334
Query 137801 ATTTTTCGCCCATAACAATCGT-TAGACCCGGACACTCGTCGGGACACATCAACGACC-A 137858
|||| || ||| |||||| | ||||| ||||| || | |||||||| || |||| |
Sbjct 8585333 ATTTATC-ACCAAAACAATTATCAAGACCTGGACATTCATAAGGACACATTAATGACCAA 8585275
Query 137859 TTTTCCTCCCGTCCTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAG 137918
| ||| || | ||| | || ||| || | | || ||| | || ||| |
Sbjct 8585274 TGAAGATCCTGTTC-AACACGTTTCATAAATAAATCTGGAACCCAAAGTCCATAAAATAA 8585216
Query 137919 GTCGCGAGC-CTTCATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaa 137977
|| ||||| ||| | ||||| | || | || | ||||||| ||||| | |
Sbjct 8585215 ATCACGAGCTCTTGCT-TCTTCTGGACCTGTGTTTTTTCTTAAATCTAAAAATTCCATTA 8585157
Query 137978 TATCAGCATGCCAAGGCTCGATATAGACGGCCATAGCTCC---TTTTCTTTTACCGCCTT 138034
||||||||||||| || || | |||| || | || || | | | ||||| || |
Sbjct 8585156 TATCAGCATGCCATGGTTCCAAGTAGATTGCAAATGCCCCAGGTCGTTTATTACCACCCT 8585097
Query 138035 GATCCACATGACGCAACA-TACTATTAAAGACACGCAA 138071
|||| |||| ||| | || |||||||| | ||||| ||
Sbjct 8585096 GATCAACATAACG-AGCAGTACTATTATAAACACGTAA 8585060
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| || || ||||| ||||| | || || | ||||| ||| | |
Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || || | || ||| ||||||| ||||| || || || || || |||||
Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|||||| | || | | ||| |||||||| ||||||| |||| | || || ||||||
Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| ||||||||||| || ||||||| ||
Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGT 10682266
Score = 105 bits (116), Expect = 6e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || || ||||| || ||| | || || | ||||| ||| ||| |
Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAA-CCATC 10681888
Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|| |||||||| | || ||| ||||||| ||||| || || || || || || ||
Sbjct 10681889 TGACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCA 10681948
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
|||||| | |||| | || |||||||| ||||||| || | | | ||||||||
Sbjct 10681949 ACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAA 10682008
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383
||||||||||| || || |||| |||||
Sbjct 10682009 CATTCAAAAAGAGTCAACTCTTCACTTAGT 10682038
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || || ||||| || ||| | || || | ||||| ||| ||| |
Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAA-CCATC 10683256
Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|| ||||| || | || ||| ||| ||| ||||| || || || || || |||||
Sbjct 10683257 TGACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCA 10683316
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
|||||| | |||| | ||| || ||||| || |||| |||| | ||||||||
Sbjct 10683317 ACAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAA 10683376
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383
||||||||||| || || ||||||| ||
Sbjct 10683377 CATTCAAAAAGAGTCAACTCTTCATTTGGT 10683406
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || || ||||| || ||| | || || | ||||| ||| |
Sbjct 10682742 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCT 10682801
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || || | || ||| ||| || ||||| || || || || || || ||
Sbjct 10682802 GACACCATTGACAATGTCAAATCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAA 10682861
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|||||| | |||| | || |||||||| ||||||| |||| | || |||||||||
Sbjct 10682862 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAT 10682921
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| |||||||| || || |||| |||||
Sbjct 10682922 ATCCAAAAAGAGTCAACTCTTCACTTAGT 10682950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445093648903200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |