Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2 118 9e-22 >seq2 Length=16759152 Score = 118 bits (130), Expect = 9e-22 Identities = 533/818 (65%), Gaps = 39/818 (5%) Strand=Plus/Minus Query 137278 AGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTG-GCT 137336 ||||| |||| ||||||||||| | |||||| |||| | ||| |||||||| | | | Sbjct 8585862 AGTGCACCATGATAAATAGTTTCAAAAATTTTTATATTAAGATCTTTAGCTTCTGGTGAT 8585803 Query 137337 GTCGTAGGGCATATCCAATATAGCGAAA--GCATCTGCAAGTCCTTGAATACCGATACCG 137394 || ||| ||| | ||| ||| ||| | ||| ||||||||||||| ||| || || Sbjct 8585802 GTGAAAGG--ATACCTCATA-AGCAAAAATGTATCAGCAAGTCCTTGAACACCAATTCCA 8585746 Query 137395 ATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTGCGTCT 137454 || || | || |||| |||||||| |||| | || |||||||| || || Sbjct 8585745 ATTGGACGATGCTTAAGATTTGATAAACGAGCTTCTTCTAGTGGATAAAAATTAATATCA 8585686 Query 137455 ATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCG 137514 |||||| |||| | ||| | || || | | | | ||| | | |||| || || || Sbjct 8585685 ATAATTTTATTTAAATTTCTTGTTACAATTTTTGTCACATCATGAAGCATTTTAAAGTCA 8585626 Query 137515 AA-----GCTTTTAGACTGTT-TGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTG 137568 || | |||| || || | | |||| |||| | ||||| || ||||| || Sbjct 8585625 AATGTAGGTTTTTTTTCTTTTATAACAACAAACATATTAAGTGCAATTGATGCTAAATTA 8585566 Query 137569 CATACGGCCGTTTCTGTATTGTCG--CTGTATTGTACAATTTCGGCGCAAAGATTGCTGT 137626 || || || ||| ||| | | ||||| | |||||| | || ||||| Sbjct 8585565 CAAACAGCAACTTC--GCTTGGAGAACAATATTGAATAATTTCAGTACATAGATTTGAAC 8585508 Query 137627 TTCGGATCACTCCCAAATTCTTTTGATTGTTTTTCTCGTTGAC-GTGATCTTTATATATC 137685 || ||| ||| ||||| | |||||| |||| || | || ||||||||||| | | Sbjct 8585507 ATCTAATCGTTCCTAAATTTTGTTGATTACTTTT-ACGATTACAATGATCTTTATAAACC 8585449 Query 137686 ATATACGGAGTTCCGGTTTCGACTTGAGTCTCAACAATTTTTCTGTGA---AGATCCAAC 137742 ||||| ||| | || ||||| | |||| || |||| ||||||| | | ||| | Sbjct 8585448 ATATATGGAATACCAGTTTCAATCTGAGATTC-ACAAATTTTCTGCCAAACAAATCTA-- 8585392 Query 137743 GCCATAATTTGTTCTCTAAACTTGCCTTGAGCTTCAAAACTTTCGTAT--AGCCGTTTAA 137800 || | ||||| | || ||| | || | |||| | ||| ||| || | || Sbjct 8585391 GCTTTTATTTGCTTTCGGAACCTTTTTTCATTTTCATA--TTTAATATAAAGTTCATCAA 8585334 Query 137801 ATTTTTCGCCCATAACAATCGT-TAGACCCGGACACTCGTCGGGACACATCAACGACC-A 137858 |||| || ||| |||||| | ||||| ||||| || | |||||||| || |||| | Sbjct 8585333 ATTTATC-ACCAAAACAATTATCAAGACCTGGACATTCATAAGGACACATTAATGACCAA 8585275 Query 137859 TTTTCCTCCCGTCCTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAG 137918 | ||| || | ||| | || ||| || | | || ||| | || ||| | Sbjct 8585274 TGAAGATCCTGTTC-AACACGTTTCATAAATAAATCTGGAACCCAAAGTCCATAAAATAA 8585216 Query 137919 GTCGCGAGC-CTTCATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaa 137977 || ||||| ||| | ||||| | || | || | ||||||| ||||| | | Sbjct 8585215 ATCACGAGCTCTTGCT-TCTTCTGGACCTGTGTTTTTTCTTAAATCTAAAAATTCCATTA 8585157 Query 137978 TATCAGCATGCCAAGGCTCGATATAGACGGCCATAGCTCC---TTTTCTTTTACCGCCTT 138034 ||||||||||||| || || | |||| || | || || | | | ||||| || | Sbjct 8585156 TATCAGCATGCCATGGTTCCAAGTAGATTGCAAATGCCCCAGGTCGTTTATTACCACCCT 8585097 Query 138035 GATCCACATGACGCAACA-TACTATTAAAGACACGCAA 138071 |||| |||| ||| | || |||||||| | ||||| || Sbjct 8585096 GATCAACATAACG-AGCAGTACTATTATAAACACGTAA 8585060 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || ||||| ||||| | || || | ||||| ||| | | Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| ||||||| ||||| || || || || || ||||| Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | ||| |||||||| ||||||| |||| | || || |||||| Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||||||||| || ||||||| || Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGT 10682266 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || ||||| || ||| | || || | ||||| ||| ||| | Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAA-CCATC 10681888 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || |||||||| | || ||| ||||||| ||||| || || || || || || || Sbjct 10681889 TGACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCA 10681948 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | |||| | || |||||||| ||||||| || | | | |||||||| Sbjct 10681949 ACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAA 10682008 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||||||||| || || |||| ||||| Sbjct 10682009 CATTCAAAAAGAGTCAACTCTTCACTTAGT 10682038 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || ||||| || ||| | || || | ||||| ||| ||| | Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAA-CCATC 10683256 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || ||| ||| ||| ||||| || || || || || ||||| Sbjct 10683257 TGACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCA 10683316 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | |||| | ||| || ||||| || |||| |||| | |||||||| Sbjct 10683317 ACAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAA 10683376 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||||||||| || || ||||||| || Sbjct 10683377 CATTCAAAAAGAGTCAACTCTTCATTTGGT 10683406 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || ||||| || ||| | || || | ||||| ||| | Sbjct 10682742 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCT 10682801 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| ||| || ||||| || || || || || || || Sbjct 10682802 GACACCATTGACAATGTCAAATCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAA 10682861 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| | || |||||||| ||||||| |||| | || ||||||||| Sbjct 10682862 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAT 10682921 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || |||||||| || || |||| ||||| Sbjct 10682922 ATCCAAAAAGAGTCAACTCTTCACTTAGT 10682950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445093648903200