Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 >seq2 Length=16759152 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || || || || ||||| ||||| | ||| |||||| | Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | | || ||| ||||||| || || ||||| | || |||||| Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | || | ||| || |||||| | |||||| | |||| | || ||||| Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || |||||||||||||| || ||||| || Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGT 10682266 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| ||||| || |||||||| |||||||| || | || |||||| | Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | | || ||| ||| ||| ||||||||||| | || |||||| Sbjct 10682574 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10682633 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| || |||||| | |||||| | |||| | || || || Sbjct 10682634 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10682693 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| ||||| || || ||||| || Sbjct 10682694 ATCCAAAAGGAATCAACTCTCCATTTGGT 10682722 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 106236 TTTGT-CATTTATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGAC 106294 ||||| |||| ||| | ||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 10681578 TTTGTACATTACTAA-ACTTTAACCATGCAAATTTTCGTTAAGACTTTGACAGGCAAAAC 10681636 Query 106295 CATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGA 106354 || || | || ||| || ||| || ||| | | || || ||| ||| || Sbjct 10681637 TATCACTCTTGAGGTAGAGCCTTCCGACACTATTGACAATGTCAAGTCAAAGATTCAAGA 10681696 Query 106355 CAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGA 106414 ||||||||| | || |||||||| || | |||| ||| || |||||| | ||||| Sbjct 10681697 CAAAGAAGGAATTCCTCCAGATCAACAGAGATTAATTTTTGCTGGAAAACAACTTGAAGA 10681756 Query 106415 TTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGT 106468 | | |||| | || || || || ||||| ||||| || || ||||| || Sbjct 10681757 TGGAAGAACTCTTTCTGACTATAATATCCAAAAGGAATCAACTCTCCATTTGGT 10681810 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||||||||| || || || || || || ||||| | ||| ||||| Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || | | | | || ||| ||||||| || || ||||| | || || ||| Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| || |||||| | |||||| | ||| | ||||||||| Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || |||||||| || || || || ||||| Sbjct 10682010 ATTCAAAAAGAGTCAACTCTTCACTTAGT 10682038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || || || || ||||| ||||| | ||| |||||| | Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | | || ||| ||| ||| ||||| ||||| | || |||||| Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 10683089 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | || | ||| || |||||| | |||||| | |||| | || || || Sbjct 10683090 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10683149 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| ||||| || || ||||| || Sbjct 10683150 ATCCAAAAGGAATCAACTCTTCATTTGGT 10683178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402328938042080