Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq2 102 7e-17
>seq2
Length=16759152
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
|||||||||||||| || || || || || ||||| ||||| | ||| |||||| |
Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| | ||| | | || ||| ||||||| || || ||||| | || ||||||
Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||||| | || | ||| || |||||| | |||||| | |||| | || |||||
Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| |||||||||||||| || ||||| ||
Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGT 10682266
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| ||||| ||||| || |||||||| |||||||| || | || |||||| |
Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| | | | | | || ||| ||| ||| ||||||||||| | || ||||||
Sbjct 10682574 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10682633
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||||| | |||| ||| || |||||| | |||||| | |||| | || || ||
Sbjct 10682634 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10682693
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| ||||| ||||| || || ||||| ||
Sbjct 10682694 ATCCAAAAGGAATCAACTCTCCATTTGGT 10682722
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/234 (69%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 106236 TTTGT-CATTTATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGAC 106294
||||| |||| ||| | ||||| ||||||||||| ||||| || ||||| ||||| ||
Sbjct 10681578 TTTGTACATTACTAA-ACTTTAACCATGCAAATTTTCGTTAAGACTTTGACAGGCAAAAC 10681636
Query 106295 CATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGA 106354
|| || | || ||| || ||| || ||| | | || || ||| ||| ||
Sbjct 10681637 TATCACTCTTGAGGTAGAGCCTTCCGACACTATTGACAATGTCAAGTCAAAGATTCAAGA 10681696
Query 106355 CAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGA 106414
||||||||| | || |||||||| || | |||| ||| || |||||| | |||||
Sbjct 10681697 CAAAGAAGGAATTCCTCCAGATCAACAGAGATTAATTTTTGCTGGAAAACAACTTGAAGA 10681756
Query 106415 TTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGT 106468
| | |||| | || || || || ||||| ||||| || || ||||| ||
Sbjct 10681757 TGGAAGAACTCTTTCTGACTATAATATCCAAAAGGAATCAACTCTCCATTTGGT 10681810
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| ||||||||||| || || || || || || ||||| | ||| |||||
Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| || | | | | || ||| ||||||| || || ||||| | || || |||
Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||||| | |||| ||| || |||||| | |||||| | ||| | |||||||||
Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| |||||||| || || || || |||||
Sbjct 10682010 ATTCAAAAAGAGTCAACTCTTCACTTAGT 10682038
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
|||||||||||||| || || || || || ||||| ||||| | ||| |||||| |
Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| | | | | | || ||| ||| ||| ||||| ||||| | || ||||||
Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 10683089
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||||| | || | ||| || |||||| | |||||| | |||| | || || ||
Sbjct 10683090 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10683149
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| ||||| ||||| || || ||||| ||
Sbjct 10683150 ATCCAAAAGGAATCAACTCTTCATTTGGT 10683178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402328938042080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |