Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 123 3e-23 seq1 89.7 5e-13 >seq2 Length=16759152 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||||||||| || || ||||| || || || || || ||| Sbjct 10681804 TGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGT 10681745 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||| || | ||| ||||| || || || |||||||| |||||||| ||| Sbjct 10681744 TTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTT 10681685 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| ||| | |||||||| | || || || ||||| || ||||| || || Sbjct 10681684 GACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTTGCCTGTC 10681625 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||||||||||||||| Sbjct 10681624 AAAGTCTTAACGAAAATTTGCAT 10681602 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||||||||| || || ||||| || || || || || ||| Sbjct 10682716 TGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGT 10682657 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||| || | || ||||| || || || |||||||| |||||||| ||| Sbjct 10682656 TTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTT 10682597 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || ||| | |||||||| | ||| || |||||||| ||||| || || || Sbjct 10682596 GATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCTTTCCAGTC 10682537 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||||||||| ||||| Sbjct 10682536 AAAGTCTTAACGAAAATCTGCAT 10682514 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || | ||| || || || || |||||||||||||| || | Sbjct 10682056 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10681997 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || ||||| || |||||||| || | || || || || || Sbjct 10681996 AGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGG 10681937 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||||||| |||||| ||| | ||||| || | ||| || Sbjct 10681936 ATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACT 10681877 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| |||||||| ||||| || ||||| ||||| ||||| Sbjct 10681876 TCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || ||||| ||||| || |||||||| | | | | | | || || || || Sbjct 10682260 TGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCA-TCTTCAAGTTG 10682202 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| ||||| | || ||||| || || || ||||| || ||||||||||| Sbjct 10682201 TTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTT 10682142 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | |||||| ||| | |||||||| | ||| || || |||||||| || || || || Sbjct 10682141 TGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTTTCCTGT 10682082 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 |||||| || || ||||||||||| Sbjct 10682081 TAAAGTCTTGACAAAAATTTGCAT 10682058 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||||||||| || || ||||| || || || || || ||| Sbjct 10683172 TGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCAAGTTGT 10683113 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| | || ||||| || || || ||||| || |||||||| ||| Sbjct 10683112 TTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATCTTT 10683053 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || ||| | |||||||| | ||| || || |||||||| || || || ||| Sbjct 10683052 GATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTT 10682993 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || ||||||||||| Sbjct 10682992 AAAGTCTTGACAAAAATTTGCAT 10682970 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || || |||||||||||||| || || || || || || || Sbjct 10683400 TGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTCAAGTTGC 10683341 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||| || | || ||||| || || || ||||| || |||||||| ||| Sbjct 10683340 TTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTGAATCTTT 10683281 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | ||||| || | ||| || || ||||||||||||||||| ||| Sbjct 10683280 GATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTTACCTGTT 10683221 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| ||||| ||||| Sbjct 10683220 AAGGTCTTAACAAAAATCTGCAT 10683198 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||| || || || || || || |||||||| ||||||||||| | Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||| || | || || || ||||| ||||| ||||| || | | Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328 Query 134694 GTTTTAACGAAAATTTGCATTTTGT 134718 || ||||||||||| ||||||| || Sbjct 15965327 GTCTTAACGAAAATCTGCATTTCGT 15965303 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| || | || || || || || || || ||||||||||| ||||| || | Sbjct 14587597 CCGGCAAATATAAGCCGTTGTTGGTCTGGTGGGATACCTTCTTTTTCATGAATCTTAGTT 14587538 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || ||||| || ||||| || |||||| Sbjct 14587537 TTAACATTATCAACTGTATCTGAGGCTTCAACCTCAAGAGTTATTGTTTTTCCAGTTAAA 14587478 Query 134694 GTTTTAACGAAAATTTGCATT 134714 |||||||| |||||||||||| Sbjct 14587477 GTTTTAACAAAAATTTGCATT 14587457 >seq1 Length=11693564 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 9088 ATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATCGGCATGGCT 9147 |||||||| || |||||||| ||||||||||| |||| | || | |||||| Sbjct 6013379 ATTAAAGAACTTTATAAAACTGTTTGGGAAATATCTCAAAAAGATATAATTGAGATGGCT 6013320 Query 9148 GCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTC--GTAGCCGCAC 9205 || ||| | || |||||||| ||||| ||||| |||| | ||| || || || Sbjct 6013319 GCTGATCGTGGTGCTTTTATAGATCAATCACAATCGCTTAA--TCTTCATGTTGCTAAAC 6013262 Query 9206 CAACTTACGC--TTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAAC 9263 || | || || |||| || || || |||| | | ||||||| || |||||||| Sbjct 6013261 CATCATATGCCATTTGTAGTTCA--ATGCATTTTCATAGTTGGAAACGTGGATTAAAAAC 6013204 Query 9264 AGGCATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTA 9313 || ||||| || || | |||||||| || ||||| || | ||||||| Sbjct 6013203 TGGAATGTATTACTTAAGAACAAAACCTGCTGCTGATGCTGTTAAATTTA 6013154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397547140200