Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_026927.1
Length=228143
Score E
Sequences producing significant alignments: (Bits) Value
seq2 150 3e-31
>seq2
Length=16759152
Score = 150 bits (166), Expect = 3e-31
Identities = 473/721 (66%), Gaps = 20/721 (3%)
Strand=Plus/Minus
Query 161192 GCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCT 161251
||||| |||||||| ||||| ||| || |||||||||||||||| | |||||
Sbjct 11787929 GCACAAAGTCATGTTAAAGTTAGTTTTGATTTACCTGAATATACAGCAGAAGTAGATGCA 11787870
Query 161252 CTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGTA---TGACAGATAGGGTC 161308
| || || ||||| | | || || || || | | ||| | | ||| |||
Sbjct 11787869 GTAGGTACATTAAGACTTCTAGATGCTATT-GTAGCAT--GTAATCTTCAACATAAGGTT 11787813
Query 161309 CGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAA 161368
| || ||||| || ||| || | ||||| || ||||| | ||||| |||
Sbjct 11787812 AAATTTTATCAGGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATTCCACAAAAA 11787753
Query 161369 GAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGG 161428
||||||||||| || || || || ||| |||| ||||| ||| | |||| || ||||
Sbjct 11787752 GAAACAACACCATTTTATCCTAGAAGTCCTTATGCAGTAGCAAAATTATATGCATTTTGG 11787693
Query 161429 ATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAAC 161488
|| | || || || | || ||||| || || ||| ||| || |||| ||
Sbjct 11787692 ATAATTAAAAATTATCGTGAAGCATATGGAATTTTTGCTTGTAATGGAATATTATTTAAT 11787633
Query 161489 CATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCC 161548
||||| |||||| || | ||| | | ||| ||||| | || ||||| || | || |
Sbjct 11787632 CATGAATCACCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGAGCTGTAGCT 11787573
Query 161549 CGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGAT 161608
|||| || ||| | || || ||| || |||||| | | | | ||| |||
Sbjct 11787572 AAAATTAATATAGGTGTTCAAGAAACATTATCTCTTGGTAATTTGGATGCTAAACGTGAT 11787513
Query 161609 TGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCT 161668
||||| ||||| |||| ||||| ||||| |||||| || | ||||| || |
Sbjct 11787512 TGGGGCCATGCAAAAGAGTATGTAGAGGCAATGTGGAGAATCCTCCAACATGATGTAGCA 11787453
Query 161669 GATGACTATGTGATTGCCACAGGTAAAGAGTATTCAGTGA-AGGACTTTGTA--GAGGCA 161725
||||| | ||| || | ||||| ||| | || | || | |||||| ||
Sbjct 11787452 GATGATTTTGTTATATCTACAGGAAAAACTGAAAGTGTAAGAGAATTTTGTAATTTAGCT 11787393
Query 161726 TCTGCTGAATACTTTGGTATGAAGATTGA-GTGGCAGGGTGAAGGATTGGATGAAGTGGG 161784
| ||||||| |||||||||| ||| | ||||| ||||||||| | ||||||| ||
Sbjct 11787392 TTTGCTGAA---ATTGGTATGAA-ATTAATATGGCAAGGTGAAGGAGTAAATGAAGTTGG 11787337
Query 161785 TATAGATAGATTTACAAAGAAGGTTGTCGTTCGTGTGAGTGA--CAAA-TACTTCAGACC 161841
||| || | ||| || || |||||||| ||| |||| |||| | ||
Sbjct 11787336 TATTGAAGAAAAAACAGGAAAAGTCCGTGTTCGTGT---TGATCCAAATTACTATCGTCC 11787280
Query 161842 AGCAGAGGTTGAAACTCTCTGGGGTGATCCCACTAAGGCTAAAGAGGTATTGGGTTGGAA 161901
| |||| ||||| | | || ||||| || || ||||||||||||||||| ||| |
Sbjct 11787279 AACAGAAGTTGATCTTTTAATTGGAGATCCTACAAAAGCTAAAGAGGTATTGGGATGGGA 11787220
Query 161902 A 161902
|
Sbjct 11787219 A 11787219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729928368243800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |