Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2 150 3e-31 >seq2 Length=16759152 Score = 150 bits (166), Expect = 3e-31 Identities = 473/721 (66%), Gaps = 20/721 (3%) Strand=Plus/Minus Query 161192 GCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCT 161251 ||||| |||||||| ||||| ||| || |||||||||||||||| | ||||| Sbjct 11787929 GCACAAAGTCATGTTAAAGTTAGTTTTGATTTACCTGAATATACAGCAGAAGTAGATGCA 11787870 Query 161252 CTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGTA---TGACAGATAGGGTC 161308 | || || ||||| | | || || || || | | ||| | | ||| ||| Sbjct 11787869 GTAGGTACATTAAGACTTCTAGATGCTATT-GTAGCAT--GTAATCTTCAACATAAGGTT 11787813 Query 161309 CGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAA 161368 | || ||||| || ||| || | ||||| || ||||| | ||||| ||| Sbjct 11787812 AAATTTTATCAGGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATTCCACAAAAA 11787753 Query 161369 GAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGG 161428 ||||||||||| || || || || ||| |||| ||||| ||| | |||| || |||| Sbjct 11787752 GAAACAACACCATTTTATCCTAGAAGTCCTTATGCAGTAGCAAAATTATATGCATTTTGG 11787693 Query 161429 ATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAAC 161488 || | || || || | || ||||| || || ||| ||| || |||| || Sbjct 11787692 ATAATTAAAAATTATCGTGAAGCATATGGAATTTTTGCTTGTAATGGAATATTATTTAAT 11787633 Query 161489 CATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCC 161548 ||||| |||||| || | ||| | | ||| ||||| | || ||||| || | || | Sbjct 11787632 CATGAATCACCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGAGCTGTAGCT 11787573 Query 161549 CGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGAT 161608 |||| || ||| | || || ||| || |||||| | | | | ||| ||| Sbjct 11787572 AAAATTAATATAGGTGTTCAAGAAACATTATCTCTTGGTAATTTGGATGCTAAACGTGAT 11787513 Query 161609 TGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCT 161668 ||||| ||||| |||| ||||| ||||| |||||| || | ||||| || | Sbjct 11787512 TGGGGCCATGCAAAAGAGTATGTAGAGGCAATGTGGAGAATCCTCCAACATGATGTAGCA 11787453 Query 161669 GATGACTATGTGATTGCCACAGGTAAAGAGTATTCAGTGA-AGGACTTTGTA--GAGGCA 161725 ||||| | ||| || | ||||| ||| | || | || | |||||| || Sbjct 11787452 GATGATTTTGTTATATCTACAGGAAAAACTGAAAGTGTAAGAGAATTTTGTAATTTAGCT 11787393 Query 161726 TCTGCTGAATACTTTGGTATGAAGATTGA-GTGGCAGGGTGAAGGATTGGATGAAGTGGG 161784 | ||||||| |||||||||| ||| | ||||| ||||||||| | ||||||| || Sbjct 11787392 TTTGCTGAA---ATTGGTATGAA-ATTAATATGGCAAGGTGAAGGAGTAAATGAAGTTGG 11787337 Query 161785 TATAGATAGATTTACAAAGAAGGTTGTCGTTCGTGTGAGTGA--CAAA-TACTTCAGACC 161841 ||| || | ||| || || |||||||| ||| |||| |||| | || Sbjct 11787336 TATTGAAGAAAAAACAGGAAAAGTCCGTGTTCGTGT---TGATCCAAATTACTATCGTCC 11787280 Query 161842 AGCAGAGGTTGAAACTCTCTGGGGTGATCCCACTAAGGCTAAAGAGGTATTGGGTTGGAA 161901 | |||| ||||| | | || ||||| || || ||||||||||||||||| ||| | Sbjct 11787279 AACAGAAGTTGATCTTTTAATTGGAGATCCTACAAAAGCTAAAGAGGTATTGGGATGGGA 11787220 Query 161902 A 161902 | Sbjct 11787219 A 11787219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729928368243800