Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq2 260 1e-64
>seq2
Length=16759152
Score = 260 bits (288), Expect = 1e-64
Identities = 508/736 (69%), Gaps = 37/736 (5%)
Strand=Plus/Plus
Query 19223 GGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTA 19282
||| | |||||| ||| |||||| || || |||||| ||||||| |||||| | |
Sbjct 490032 GGATTTTGAAAGT-ATGGGAATTGGTGGTTTAGATAAAGAATTTTCTGCCATCTTTAGAA 490090
Query 19283 GAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGT-CA--TTAAACAATTGGG-ATGTAAA 19338
|||||||| | | | || |||| || || || || ||||||| || ||| |||
Sbjct 490091 GAGCATTTTT-TAGTAGATTATTTC--CACCTGAACAAGTTGAACAATTAGGCATG-AAA 490146
Query 19339 CATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGA 19398
|| |||||||| |||| |||||||| ||||| ||| ||| ||||| ||||| || |
Sbjct 490147 CACGTTCGTGGTATTTTACTTTATGGACCACCTGGTACTGGTAAAACTTTAATAGCCCGT 490206
Query 19399 GAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATC 19455
|| | | ||| ||| | | | | ||||| |||||||||||||| || ||||
Sbjct 490207 CAAATAGGAAAAATGTTAAATGCTAGAGAACCT---AAAATTGTAAATGGACCACAAATT 490263
Query 19456 TTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAA 19515
||| |||||||||| ||| || |||| ||| || || || |||| ||| ||||||
Sbjct 490264 TTAGATAAATATGTTGGTGAAAGTGAAGCTAATATAAGAAAATTATTTGGTGATGCTGAA 490323
Query 19516 GAAGAACAAAAACGTTTAGGGCGCAAAAGTTC---TTTGCACATTATAATACTAGATGAA 19572
|||||| ||| | | || || | ||| ||| || || || || | ||||||
Sbjct 490324 GAAGAATTTAAAAGATGTGGA---AATAATTCAGCTTTACATATAATTATTTTTGATGAA 490380
Query 19573 TTGGACGCAATCTGTAAGCAAAGAGGTTCT---GGTGTAAATG---GAGTACATGACACT 19626
| || || || ||||| |||||||| || | || || | | || ||||| |||
Sbjct 490381 ATTGATGCTATTTGTAAACAAAGAGGAACTCAAGCTGGAAGTTCCAGTGTTCATGATACT 490440
Query 19627 GTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTT 19686
|| || |||||| | || ||||| | || |||||| | ||| | |||||||||||||||
Sbjct 490441 GTAGTTAATCAAATTTTGACAAAAATGGATGGTGTTGATCAATTAAATAATATTTTAGTT 490500
Query 19687 ATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTG 19746
||||| ||||| |||||| || | || || || || ||| |||| || | ||
Sbjct 490501 ATTGGTATGACAAATAGAAAAGATATGATTGATGAAGCTTTGTTAAGACCAGGAAGAATG 490560
Query 19747 GAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATA 19806
||| | | || |||||| ||||| |||||| ||||||||| |||||||| ||||
Sbjct 490561 GAAGTTCAAATGGAAATTTCTTTACCAGATGAAAATGGACGTGTACAAATTTTACACATT 490620
Query 19807 CATACATCAACCATGCGACAAAATAACCTTTTAAAT---GAC--GATGTAGATCTAGAAG 19861
|| ||| | | ||| || || |||| ||||| ||| ||||| ||| | |||
Sbjct 490621 CACACAGCTAAAATGAGAGAATATAA-----TAAATTAGGACCTGATGTTGATATTAAAG 490675
Query 19862 AAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCG 19921
|||||| | || ||||| | | || || ||| |||| || || || | || |
Sbjct 490676 CAATTGCTAAGAAAACTAAAAATTTTTCTGGTGCTGAAATTGAAGGTTTGGTACGCGCAG 490735
Query 19922 CCCAATCAATTGCAAT 19937
| ||||||| ||| ||
Sbjct 490736 CTCAATCAAGTGCTAT 490751
Score = 228 bits (252), Expect = 6e-55
Identities = 505/745 (68%), Gaps = 18/745 (2%)
Strand=Plus/Plus
Query 43837 TTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTT 43896
|||||| || || || || || ||||| || || || || || ||||| |||||
Sbjct 14764002 TTTTATTTCACGTGTCTTAGCTTTCTTTGCCGCTTCTGATGGTATTGTTAATGAGAATTT 14764061
Query 43897 GGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCA 43956
||| | ||| | ||||||||||| | || || ||||| | || ||||| || ||
Sbjct 14764062 GGTCGAGAGATTTTCTAAAGAAGTTCAAATTCCCGAGGCACGTTTCTTCTATGGTTTCCA 14764121
Query 43957 AATTGCCATAGAAAATATTCATTCGGAAATGTAC---AGTCTTCT-GATAGATACGTACA 44012
||||||||| ||||||||||| || ||||| | ||| | || | || |||
Sbjct 14764122 AATTGCCATGGAAAATATTCACAGTGAGATGTATTCAAAACTTATCGAAACCTATATACG 14764181
Query 44013 TCAAAGATGGGCACGAGAAGCATCGAT-TGTTTAATGCGATAGAAACAGTACCTGCGATT 44071
| | | ||| |||| ||| || | | |||||||| |||| | || ||
Sbjct 14764182 TGACA-ATG---ACGA-AAGAATGAAACTTTTTAATGCTTTAGATGAGTTTCCATTTATC 14764236
Query 44072 AAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT--TCA-AATGATTCTTTTGGAGAA 44128
| | | ||||| || ||||| | | |||||| | | | |||| | |||||||||||
Sbjct 14764237 AGAAAAAAAGCTGATTGGGCTTTAAGATGGATCGCTGATAAGAATGCTACTTTTGGAGAA 14764296
Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATA 44188
||| || | || ||||||| ||| ||||| || |||||||| || || ||||| |||||
Sbjct 14764297 CGAGTTATTGCTTTTGCAGCTGTTGAAGGTATCTTCTTTTCTGGTTCATTTGCTTCCATA 14764356
Query 44189 TTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGT 44248
|||||| | |||||||| ||||||||||| || ||||| ||| ||||| || ||
Sbjct 14764357 TTTTGGCTGAAGAAACGTGGTTTGATGCCAGGATTGACACATTCCAATGAATTGATTTCA 14764416
Query 44249 CGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGAT 44308
| ||||| || ||||| | ||||| || ||| | | || | || || | | ||
Sbjct 14764417 AGAGATGAGGGATTACACCGTGATTTCGCCTGCCTTATGTTTAGTTACCTTGAAAAC--- 14764473
Query 44309 AAGCCTTCATGTAAGAC-AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGA 44367
|| || || || | || || | ||| ||| || | | ||||| | || ||| | ||
Sbjct 14764474 AAACCATC-TGAAGAACGTATAAAAGAAATTATTAAAAATGCAGTTGATATTGAAAAGGA 14764532
Query 44368 ATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCA 44427
|| | ||| || | ||||| || | || |||||||| || ||| |||
Sbjct 14764533 ATACCTTACAGATGCTCTTCCTGTTGATATGATTGGAATGAACTCACGTTTAATGTGTAC 14764592
Query 44428 ATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATAT 44487
|||||||||||| | || || | ||| | ||||||| ||| |||| ||||
Sbjct 14764593 ATATATTGAATATGTAGCTGACCATTTGTTGGTGGAACTTAATTGTTCAAAACTTTATAA 14764652
Query 44488 TGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTT 44547
||| | ||||| ||||||||||||| |||||||| | || || |||||||| || ||
Sbjct 14764653 TGTTAAGAACCCCTTTGATTTTATGGTTAATATTTCAATTGAGGGAAAAACAAATTTCTT 14764712
Query 44548 TGAAAAACGCGTTGGAGAATATCAG 44572
||| ||| ||| |||||||||
Sbjct 14764713 TGAGAAAAAAGTTTCTGAATATCAG 14764737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397455346060675
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |