Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 260 1e-64 >seq2 Length=16759152 Score = 260 bits (288), Expect = 1e-64 Identities = 508/736 (69%), Gaps = 37/736 (5%) Strand=Plus/Plus Query 19223 GGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTA 19282 ||| | |||||| ||| |||||| || || |||||| ||||||| |||||| | | Sbjct 490032 GGATTTTGAAAGT-ATGGGAATTGGTGGTTTAGATAAAGAATTTTCTGCCATCTTTAGAA 490090 Query 19283 GAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGT-CA--TTAAACAATTGGG-ATGTAAA 19338 |||||||| | | | || |||| || || || || ||||||| || ||| ||| Sbjct 490091 GAGCATTTTT-TAGTAGATTATTTC--CACCTGAACAAGTTGAACAATTAGGCATG-AAA 490146 Query 19339 CATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGA 19398 || |||||||| |||| |||||||| ||||| ||| ||| ||||| ||||| || | Sbjct 490147 CACGTTCGTGGTATTTTACTTTATGGACCACCTGGTACTGGTAAAACTTTAATAGCCCGT 490206 Query 19399 GAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATC 19455 || | | ||| ||| | | | | ||||| |||||||||||||| || |||| Sbjct 490207 CAAATAGGAAAAATGTTAAATGCTAGAGAACCT---AAAATTGTAAATGGACCACAAATT 490263 Query 19456 TTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAA 19515 ||| |||||||||| ||| || |||| ||| || || || |||| ||| |||||| Sbjct 490264 TTAGATAAATATGTTGGTGAAAGTGAAGCTAATATAAGAAAATTATTTGGTGATGCTGAA 490323 Query 19516 GAAGAACAAAAACGTTTAGGGCGCAAAAGTTC---TTTGCACATTATAATACTAGATGAA 19572 |||||| ||| | | || || | ||| ||| || || || || | |||||| Sbjct 490324 GAAGAATTTAAAAGATGTGGA---AATAATTCAGCTTTACATATAATTATTTTTGATGAA 490380 Query 19573 TTGGACGCAATCTGTAAGCAAAGAGGTTCT---GGTGTAAATG---GAGTACATGACACT 19626 | || || || ||||| |||||||| || | || || | | || ||||| ||| Sbjct 490381 ATTGATGCTATTTGTAAACAAAGAGGAACTCAAGCTGGAAGTTCCAGTGTTCATGATACT 490440 Query 19627 GTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTT 19686 || || |||||| | || ||||| | || |||||| | ||| | ||||||||||||||| Sbjct 490441 GTAGTTAATCAAATTTTGACAAAAATGGATGGTGTTGATCAATTAAATAATATTTTAGTT 490500 Query 19687 ATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTG 19746 ||||| ||||| |||||| || | || || || || ||| |||| || | || Sbjct 490501 ATTGGTATGACAAATAGAAAAGATATGATTGATGAAGCTTTGTTAAGACCAGGAAGAATG 490560 Query 19747 GAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATA 19806 ||| | | || |||||| ||||| |||||| ||||||||| |||||||| |||| Sbjct 490561 GAAGTTCAAATGGAAATTTCTTTACCAGATGAAAATGGACGTGTACAAATTTTACACATT 490620 Query 19807 CATACATCAACCATGCGACAAAATAACCTTTTAAAT---GAC--GATGTAGATCTAGAAG 19861 || ||| | | ||| || || |||| ||||| ||| ||||| ||| | ||| Sbjct 490621 CACACAGCTAAAATGAGAGAATATAA-----TAAATTAGGACCTGATGTTGATATTAAAG 490675 Query 19862 AAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCG 19921 |||||| | || ||||| | | || || ||| |||| || || || | || | Sbjct 490676 CAATTGCTAAGAAAACTAAAAATTTTTCTGGTGCTGAAATTGAAGGTTTGGTACGCGCAG 490735 Query 19922 CCCAATCAATTGCAAT 19937 | ||||||| ||| || Sbjct 490736 CTCAATCAAGTGCTAT 490751 Score = 228 bits (252), Expect = 6e-55 Identities = 505/745 (68%), Gaps = 18/745 (2%) Strand=Plus/Plus Query 43837 TTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTT 43896 |||||| || || || || || ||||| || || || || || ||||| ||||| Sbjct 14764002 TTTTATTTCACGTGTCTTAGCTTTCTTTGCCGCTTCTGATGGTATTGTTAATGAGAATTT 14764061 Query 43897 GGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCA 43956 ||| | ||| | ||||||||||| | || || ||||| | || ||||| || || Sbjct 14764062 GGTCGAGAGATTTTCTAAAGAAGTTCAAATTCCCGAGGCACGTTTCTTCTATGGTTTCCA 14764121 Query 43957 AATTGCCATAGAAAATATTCATTCGGAAATGTAC---AGTCTTCT-GATAGATACGTACA 44012 ||||||||| ||||||||||| || ||||| | ||| | || | || ||| Sbjct 14764122 AATTGCCATGGAAAATATTCACAGTGAGATGTATTCAAAACTTATCGAAACCTATATACG 14764181 Query 44013 TCAAAGATGGGCACGAGAAGCATCGAT-TGTTTAATGCGATAGAAACAGTACCTGCGATT 44071 | | | ||| |||| ||| || | | |||||||| |||| | || || Sbjct 14764182 TGACA-ATG---ACGA-AAGAATGAAACTTTTTAATGCTTTAGATGAGTTTCCATTTATC 14764236 Query 44072 AAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT--TCA-AATGATTCTTTTGGAGAA 44128 | | | ||||| || ||||| | | |||||| | | | |||| | ||||||||||| Sbjct 14764237 AGAAAAAAAGCTGATTGGGCTTTAAGATGGATCGCTGATAAGAATGCTACTTTTGGAGAA 14764296 Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATA 44188 ||| || | || ||||||| ||| ||||| || |||||||| || || ||||| ||||| Sbjct 14764297 CGAGTTATTGCTTTTGCAGCTGTTGAAGGTATCTTCTTTTCTGGTTCATTTGCTTCCATA 14764356 Query 44189 TTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGT 44248 |||||| | |||||||| ||||||||||| || ||||| ||| ||||| || || Sbjct 14764357 TTTTGGCTGAAGAAACGTGGTTTGATGCCAGGATTGACACATTCCAATGAATTGATTTCA 14764416 Query 44249 CGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGAT 44308 | ||||| || ||||| | ||||| || ||| | | || | || || | | || Sbjct 14764417 AGAGATGAGGGATTACACCGTGATTTCGCCTGCCTTATGTTTAGTTACCTTGAAAAC--- 14764473 Query 44309 AAGCCTTCATGTAAGAC-AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGA 44367 || || || || | || || | ||| ||| || | | ||||| | || ||| | || Sbjct 14764474 AAACCATC-TGAAGAACGTATAAAAGAAATTATTAAAAATGCAGTTGATATTGAAAAGGA 14764532 Query 44368 ATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCA 44427 || | ||| || | ||||| || | || |||||||| || ||| ||| Sbjct 14764533 ATACCTTACAGATGCTCTTCCTGTTGATATGATTGGAATGAACTCACGTTTAATGTGTAC 14764592 Query 44428 ATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATAT 44487 |||||||||||| | || || | ||| | ||||||| ||| |||| |||| Sbjct 14764593 ATATATTGAATATGTAGCTGACCATTTGTTGGTGGAACTTAATTGTTCAAAACTTTATAA 14764652 Query 44488 TGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTT 44547 ||| | ||||| ||||||||||||| |||||||| | || || |||||||| || || Sbjct 14764653 TGTTAAGAACCCCTTTGATTTTATGGTTAATATTTCAATTGAGGGAAAAACAAATTTCTT 14764712 Query 44548 TGAAAAACGCGTTGGAGAATATCAG 44572 ||| ||| ||| ||||||||| Sbjct 14764713 TGAGAAAAAAGTTTCTGAATATCAG 14764737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455346060675