Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 >seq1 Length=11693564 Score = 98.7 bits (108), Expect = 8e-16 Identities = 792/1274 (62%), Gaps = 40/1274 (3%) Strand=Plus/Plus Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 |||||| | | |||| ||| | ||||| ||||| || | || || |||||| ||| Sbjct 6013473 ATCTTTAAGAAGATGAGGATTGACAATTTGGAAATCTCCTGAAAGAACACGTCTAGTGTA 6013532 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 |||||| || | ||||||| ||||| || || || | || ||||| || | || Sbjct 6013533 AATGTTAGAAGTATATGGTTCAATAGATTCATTATTTCCTAGAATCTGTGCAGTTGAAGC 6013592 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914 || ||||| || | ||||| |||||| | | ||| || | | || | | || Sbjct 6013593 AGTTGGCATTGGAGCAAGTAATAAAGAATTTCTTACACCATGTTTTGCAATGTCTGCTTT 6013652 Query 130915 CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAG 130974 || ||||||||||||| | | ||||||||| |||||||| ||| |||| || Sbjct 6013653 TAAAGTTTCCCAATCCCATAAATCACTTGGTTTGACA---TTCCACATGTCATATTGAAG 6013709 Query 130975 TATGCCTTTACTGGCGGGACTGGAT---TCGAACGATTCGTAGATTCCTTCGACACG--- 131028 || ||||| | ||| ||| || | | || || || | |||| Sbjct 6013710 AATACCTTTTGATACTGGA---GATCCATCATATGTCTCATAAGGACCAT---CACGTTC 6013763 Query 131029 AGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATT 131088 ||| | || ||||||||| ||||| | ||||| ||||| ||| ||||| Sbjct 6013764 AGCTACTTCACATGAAGCTTCCAATGCTCCATGGTAAATTGTTTCAAAAATCAACTTATT 6013823 Query 131089 TAATTGTTTCGCTTGGTTGCTCTCGT--AAGGAAATTTCATTAAAATAAAAGCGTCTGCG 131146 | || ||| || || | | || ||||| | ||| | ||||| || || || Sbjct 6013824 AAGTTCTTTAGC--GGCAGGTGAAGTGAAAGGATAACGCATAAGCATAAATGCATCAGCT 6013881 Query 131147 AGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCG 131206 | |||||| | |||| || | || | ||| | | ||| |||| | | ||| Sbjct 6013882 AAACCCTGAACACCAATACCAATTGGACGGTGTCTCATATTTGATTTTCTGG---CTTCA 6013938 Query 131207 GTG---GGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTG 131263 | | |||||| || | ||||| ||||| || ||||| || ||||| | Sbjct 6013939 GGGACAGGATAATAATTGACATCAATAATTTTATTCAAATTTTTAGTTAGAATTTTAGAA 6013998 Query 131264 ACGCTTTTCAATTTGTCGAAATCAAACG------TGCCAGTTTCGAGGTTTACAAATTGA 131317 || | | || | ||||| ||| | | ||| | | | | |||||| | Sbjct 6013999 ACAACATGAAGTTGTTTGAAATTAAAAGCAGGTTTACCATCTACAACTTCAACAAATCTA 6014058 Query 131318 TTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACA 131377 || | | || || | |||||||| || || ||| || | ||||| | |||| Sbjct 6014059 TTAAGAGCAATAGATCCTAGATTACATACAGCAACTTCATCTGGTGCACAATATTCAACA 6014118 Query 131378 ATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCA 131437 ||||| | || ||||| | || ||||| || | |||||||||||| |||||| | Sbjct 6014119 ATTTCAGTACATAAATTTGAACATTTAATGGTTCCAAGATTTTGTTGATTACTTTTACGA 6014178 Query 131438 TTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATG 131497 || ||| || ||||| | ||| || || || || ||||| | |||| ||||| ||| Sbjct 6014179 TTACAATGATCTTTGTAAACCATATAAGGTGTTCCGGTTTCAATTTGACTTTCACAAATC 6014238 Query 131498 TATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTT 131557 | | | | | || || | ||| | | |||| | ||||| || || Sbjct 6014239 TTTTGCCAAATAACTCTGGCCTTTATTTGTTTTCTGTAACGTTTCTCATTTTCATACTTG 6014298 Query 131558 TCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTC--CAAAT-TGGGACATTCGCTG 131614 | || || ||||| | || | || | || ||| | ||||||||| | Sbjct 6014299 TGATATAATTCCTCAAAAGCCT---CACCCCAAGTATCCTCAAGTCCAGGACATTCGTGG 6014355 Query 131615 GGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACC 131674 || ||||| | ||||| || | || || || |||||||| ||||| || | | Sbjct 6014356 GGGCACATCAAAGACCAATAAGAGTCTTTCTCTACACGTTTCATAAATAAATCAGGAATC 6014415 Query 131675 CATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAA 131734 || | | || || | ||| | |||| ||| ||||| | || || |||| || | | Sbjct 6014416 CAAAGACCATAAAATAAATCACGAGCTCTTTCTTCTTCAGGGCCTGTATTTTTCTTAAGA 6014475 Query 131735 TTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCC---T 131791 | ||||| || |||||||| |||||||| ||||| | ||| | || | ||| || | Sbjct 6014476 TCCAAAAATTCTAAAATGTCAGCATGCCATGGTTCTAGATATATAGCAAATGCTCCAGGT 6014535 Query 131792 TTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGC 131851 | || || ||||| | ||||| || | | ||||| | || | |||||| || Sbjct 6014536 CTTTTATTTCCCCCTTGGTCAACATAGCGTGCTGTATTGTTAAAAACTCTCAACATTGGT 6014595 Query 131852 TCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTG 131911 || || || | | ||||| || | ||| | ||||| || | || Sbjct 6014596 ATTAATCCATTAGATGTACCATTTGTACCACCAATAAAAGAACCATTAGCACGAATACAA 6014655 Query 131912 TGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTG 131971 ||||| || | ||||||||| || | |||| || |||| ||| |||| | ||||| Sbjct 6014656 TGAACATTCAATCCAATACCGCCAGCAGATTTTGAAATTAATGCACATTGTTTAAGAGTA 6014715 Query 131972 TTATAGATACCTTC 131985 | ||| |||||||| Sbjct 6014716 TCATATATACCTTC 6014729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933700850120