Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 4e-15
>seq2
Length=16759152
Score = 96.9 bits (106), Expect = 4e-15
Identities = 269/409 (66%), Gaps = 8/409 (2%)
Strand=Plus/Minus
Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512
||||| | || || | ||| || || ||| | ||||| | ||||| || || |||
Sbjct 9293313 TCAAATCTTCCAGGTCTAAGAAGTGCACTATCTAACATATCTGCACGATTTGTTGCAGCA 9293254
Query 11513 ATAACCACAATGCCAGTCT---CATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569
||||| | || || | || | ||| |||||||| || ||||||||||||
Sbjct 9293253 ATAACAATAACAGAAGATTGTTCAGTACTAAAACCATCCATTTCAACAAGTAATTGATTA 9293194
Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACC---AGCACTGCGTTGCTTGCCC 11626
| || | |||| || || | ||||| ||| | |||| | || | ||
Sbjct 9293193 AGAGTATTTTCTTGTTCTGAATGACCACCCATACTACCTTTACCACTTCTTTTTCTTCCA 9293134
Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686
|| ||||| || |||||||| || | ||||||||| ||||| | || || ||||
Sbjct 9293133 ACAGCATCTATTTCATCAATAAACAAGATACATGGTGAATTTTTTCTAGCCATAGCAAAC 9293074
Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746
| ||| || || || | ||| |||||||||||||| || | ||| | || ||||
Sbjct 9293073 ATATCACGTACTCTAGCAGGACCAACACCAACAAACATTTCAAGAAACTCTGATCCAGA- 9293015
Query 11747 CACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805
|||| || ||||| ||||| | |||||| || ||||| || || | || || ||
Sbjct 9293014 TACTGTTATAAATGGTACATTAGCTTCACCAGCAGTGGCTTTAGCAAGTAATGTTTTACC 9292955
Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854
|||||||| || | ||||| || ||| || || || ||||||
Sbjct 9292954 TGTACCTGGTGGTCCTGTAAGAAGAGCTCCTTTAGGAATTTTAGCACCA 9292906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628030940196000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |