Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 4e-15 >seq2 Length=16759152 Score = 96.9 bits (106), Expect = 4e-15 Identities = 269/409 (66%), Gaps = 8/409 (2%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| | || || | ||| || || ||| | ||||| | ||||| || || ||| Sbjct 9293313 TCAAATCTTCCAGGTCTAAGAAGTGCACTATCTAACATATCTGCACGATTTGTTGCAGCA 9293254 Query 11513 ATAACCACAATGCCAGTCT---CATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 ||||| | || || | || | ||| |||||||| || |||||||||||| Sbjct 9293253 ATAACAATAACAGAAGATTGTTCAGTACTAAAACCATCCATTTCAACAAGTAATTGATTA 9293194 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACC---AGCACTGCGTTGCTTGCCC 11626 | || | |||| || || | ||||| ||| | |||| | || | || Sbjct 9293193 AGAGTATTTTCTTGTTCTGAATGACCACCCATACTACCTTTACCACTTCTTTTTCTTCCA 9293134 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || |||||||| || | ||||||||| ||||| | || || |||| Sbjct 9293133 ACAGCATCTATTTCATCAATAAACAAGATACATGGTGAATTTTTTCTAGCCATAGCAAAC 9293074 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 | ||| || || || | ||| |||||||||||||| || | ||| | || |||| Sbjct 9293073 ATATCACGTACTCTAGCAGGACCAACACCAACAAACATTTCAAGAAACTCTGATCCAGA- 9293015 Query 11747 CACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 |||| || ||||| ||||| | |||||| || ||||| || || | || || || Sbjct 9293014 TACTGTTATAAATGGTACATTAGCTTCACCAGCAGTGGCTTTAGCAAGTAATGTTTTACC 9292955 Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 |||||||| || | ||||| || ||| || || || |||||| Sbjct 9292954 TGTACCTGGTGGTCCTGTAAGAAGAGCTCCTTTAGGAATTTTAGCACCA 9292906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030940196000