Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1 170 2e-37
seq2 93.3 5e-14
>seq1
Length=11693564
Score = 170 bits (188), Expect = 2e-37
Identities = 910/1419 (64%), Gaps = 65/1419 (5%)
Strand=Plus/Minus
Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275
|||| ||||| | | || ||||| ||||| | || ||||||||||| || ||| ||
Sbjct 6014921 GAAAGACCACAACATTTATTAATGCGTGTGGCAGTTGGAATTCATGGGGATGATATTAAT 6014862
Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 104334
||||| | || ||||| ||| | ||||| || | || ||| | ||| || | |||||
Sbjct 6014861 TCTGTTATTGAAACATATGACTATATGTCTCAGAAGT-GGTTTACTCATGCCTCTCCAAC 6014803
Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAA 104394
| || ||||| || || | | || || |||| || || |||| | |||||
Sbjct 6014802 ATTATTTAATGCAGGAACCAGACGTCCACAGCTGTCTTCGTG-TTTCTTA---CTAACAA 6014747
Query 104395 ----GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAA 104450
|| || ||||| | ||||| |||| ||||||| | ||||| ||| ||||
Sbjct 6014746 TGTCTGATGATTCAATTGAAGGTATATATGATACTCTTAAACAATGTGCATTAATTTCAA 6014687
Query 104451 AGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTC 104510
| | ||||| |||||||| || | | ||| | | | || ||| ||| ||||
Sbjct 6014686 AATCTGCTGGCGGTATTGGATTGAATGTTCATTGTATTCGTGCTAATGGTTCTTTTATTG 6014627
Query 104511 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 104570
| || ||||||||| ||| |||| | || |||||| | | || |||||| ||||
Sbjct 6014626 GTGGTACAAATGGTACATCTAATGGATTAATACCAATGTTGAGAGTTTTTAACAATACAG 6014567
Query 104571 CGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAG 104626
| |||||||| | |||| ||| |||| ||| | | || | ||||| ||
Sbjct 6014566 CACGCTATGTTGACCAAG-GGGGAAATAAAAGACCTGGAGCATTTGCTATATATCTAGAA 6014508
Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGA-GTTGCGTCTCAACCAAG--GTGACGAG 104683
|||||||| || || || | || || | || || | | || | ||| ||
Sbjct 6014507 CCATGGCATGCTGACATTTTAGAATTTTTGGATCTTAAGAAAAATACAGGCCCTGAAGAA 6014448
Query 104684 GAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 104743
|| | | | || ||| | || | | ||| |||||||| ||| | || ||||| |
Sbjct 6014447 GA-AAGAGCT--CGTGATTTATTTTATGGTCTTTGGATTCCTGATTTATTTATGAAACGT 6014391
Query 104744 GTTGAG-GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA 104802
|| ||| ||| | |||||||| | | || || || | ||||| || ||
Sbjct 6014390 GTAGAGAAAGACT-CTTATTGGTCTTTGATGTGCCCCCACGAATGTCCTGGACTTGAGGA 6014332
Query 104803 TGCCGTGGGTGAGGAGTTTGAAGCCCTTTA-CACAAAGTACG---AGGAAGAAGGT--CG 104856
| | |||||||| ||||| | | || ||| ||||| | | || || || |
Sbjct 6014331 TACTTGGGGTGAGGCTTTTGAGGAATTATATCAC-AAGTATGAAAATGAGAAACGTTACA 6014273
Query 104857 GGCGACTGCGACGGTGCCAGCTGCCGATGTGTGG--AAAGCTATTCTCAAGTCTCAAACC 104914
| || | | ||||| | | | ||| |||| | || | || |||||
Sbjct 6014272 GAAAACAAATAAAG-GCCAG----AGTTATTTGGCAAAAGAT-TTGTGAA-AGTCAAATT 6014220
Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974
|| || || ||||| || ||| |||||||||| ||||| | || ||||||||| |
Sbjct 6014219 GAAACCGGAACACCTTATATGGTTTACAAAGATCATTGTAATCGTAAAAGTAATCAACAA 6014160
Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA 105034
||| | || || || |||| ||| | ||||| ||||| | |||| | | |
Sbjct 6014159 AATCTTGGAACCATTAAATGTTCAAATTTATGTACTGAAATTGTTGAATATTGTGCACCA 6014100
Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA---TCCA 105091
||||| ||||| ||||| || | ||| || ||||| | | ||| || | |
Sbjct 6014099 GATGAAGTTGCTGTATGTAATCTAGGATCTATTGCTCTTAATAGATTTGTTGAAGTTGTA 6014040
Query 105092 GA-GACAAA--GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAA 105148
|| | ||| | ||| ||| || |||| || | ||| | |||| | | || |||
Sbjct 6014039 GATGGTAAACCTGCTTTTAATTTCAAACAACTTCATGTTGTTTCTAAAATTCTAACTAAA 6013980
Query 105149 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCT 105205
|| | || | | |||||||| |||| ||| || || ||| || | |||||
Sbjct 6013979 AATTTGAATAAAATTATTGATGTCAATTATTATCCTGTCCCTGA---AGCCAGAAAATCA 6013923
Query 105206 AATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTT 105265
|||||||||||||||||||||||| | |||||||||||| | || |||| ||| || |||
Sbjct 6013922 AATATGAGACACCGTCCAATTGGTATTGGTGTTCAGGGTTTAGCTGATGCATTTATGCTT 6013863
Query 105266 TGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACC 105325
|| | | || ||| | || || ||| | ||| | || ||||| ||
Sbjct 6013862 ATGCGTTATCCTTTCACTTCACCTGCCGCTAAAGAACTTAATAAGTTGATTTTTGAAACA 6013803
Query 105326 ATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATAT 105382
|| || || | || | || || |||| || | || || ||||||||| |||
Sbjct 6013802 ATTTACCATGGAGCATTGGAAGC---TTCATGTGAAGTAGCTGAACGTGATGGTCCTTAT 6013746
Query 105383 GAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGT 105442
|| || | ||| || ||||||| ||| |||| | ||||||| ||| |||| |||| ||
Sbjct 6013745 GAGACATATGATGGATCTCCAGTATCAAAAGGTATTCTTCAATATGACATGT-GGAATGT 6013687
Query 105443 GAGACCAA--GCTTCACTACGACTGGGAAGCTCTCAAGGAACGCAT--CAAGGAGAAGGG 105498
| ||||| | || | | || |||||| || | || | | ||| ||| | | ||
Sbjct 6013686 CAAACCAAGTGATTTA-TGGGATTGGGAAACTTTAAAAGCAGACATTGCAA--AACATGG 6013630
Query 105499 TCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGG 105558
| | | || | | | | |||||||||||||| || || || ||||| || | ||
Sbjct 6013629 TGTAAGAAATTCTTTATTACTTGCTCCAATGCCAACTGCTTCAACTGCACAGATTCTAGG 6013570
Query 105559 TAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597
|||||||||| ||||||| || || | ||||| ||
Sbjct 6013569 AAATAATGAATCTATTGAACCATATACTTCTAACATTTA 6013531
>seq2
Length=16759152
Score = 93.3 bits (102), Expect = 5e-14
Identities = 242/368 (66%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
||||| | || || | ||| || || ||| | ||||| | ||||| || || ||
Sbjct 9293313 TCAAATCTTCCAGGTCTAAGAAGTGCACTATCTAACATATCTGCACGATTTGTTGCAGCA 9293254
Query 9587 ATGACAACAATACCTGTTT---CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643
|| |||| || | | || || || |||||||||||| || | | ||| |||
Sbjct 9293253 ATAACAATAACAGAAGATTGTTCAGTACTAAAACCATCCATTTCAACAAGTAATTGATTA 9293194
Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGTTGCTTTCCC 9700
| ||| | ||| |||| || | ||||| ||| | |||| | || ||||
Sbjct 9293193 AGAGTATTTTCTTGTTCTGAATGACCACCCATACTACCTTTACCACTTCTTTTTCTTCCA 9293134
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760
|| ||||| || |||||||| || | ||| |||||| ||||| | ||| | ||||
Sbjct 9293133 ACAGCATCTATTTCATCAATAAACAAGATACATGGTGAATTTTTTCTAGCCATAGCAAAC 9293074
Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820
| ||| ||||| | | || |||||||||||||| || | ||| | || | ||
Sbjct 9293073 ATATCACGTACTCTAGCAGGACCAACACCAACAAACATTTCAAGAAACTCTGATCCAGAT 9293014
Query 9821 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880
| || || || ||||||| |||||| ||| ||||| || || | || |||||
Sbjct 9293013 ACTGTTATAAATGGTACATTAGCTTCACCAGCAGTGGCTTTAGCAAGTAATGTTTTACCT 9292954
Query 9881 GTACCTGG 9888
||||||||
Sbjct 9292953 GTACCTGG 9292946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583259815747400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |