Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 170 2e-37 seq2 93.3 5e-14 >seq1 Length=11693564 Score = 170 bits (188), Expect = 2e-37 Identities = 910/1419 (64%), Gaps = 65/1419 (5%) Strand=Plus/Minus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| ||||| | | || ||||| ||||| | || ||||||||||| || ||| || Sbjct 6014921 GAAAGACCACAACATTTATTAATGCGTGTGGCAGTTGGAATTCATGGGGATGATATTAAT 6014862 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 104334 ||||| | || ||||| ||| | ||||| || | || ||| | ||| || | ||||| Sbjct 6014861 TCTGTTATTGAAACATATGACTATATGTCTCAGAAGT-GGTTTACTCATGCCTCTCCAAC 6014803 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAA 104394 | || ||||| || || | | || || |||| || || |||| | ||||| Sbjct 6014802 ATTATTTAATGCAGGAACCAGACGTCCACAGCTGTCTTCGTG-TTTCTTA---CTAACAA 6014747 Query 104395 ----GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAA 104450 || || ||||| | ||||| |||| ||||||| | ||||| ||| |||| Sbjct 6014746 TGTCTGATGATTCAATTGAAGGTATATATGATACTCTTAAACAATGTGCATTAATTTCAA 6014687 Query 104451 AGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTC 104510 | | ||||| |||||||| || | | ||| | | | || ||| ||| |||| Sbjct 6014686 AATCTGCTGGCGGTATTGGATTGAATGTTCATTGTATTCGTGCTAATGGTTCTTTTATTG 6014627 Query 104511 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 104570 | || ||||||||| ||| |||| | || |||||| | | || |||||| |||| Sbjct 6014626 GTGGTACAAATGGTACATCTAATGGATTAATACCAATGTTGAGAGTTTTTAACAATACAG 6014567 Query 104571 CGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAG 104626 | |||||||| | |||| ||| |||| ||| | | || | ||||| || Sbjct 6014566 CACGCTATGTTGACCAAG-GGGGAAATAAAAGACCTGGAGCATTTGCTATATATCTAGAA 6014508 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGA-GTTGCGTCTCAACCAAG--GTGACGAG 104683 |||||||| || || || | || || | || || | | || | ||| || Sbjct 6014507 CCATGGCATGCTGACATTTTAGAATTTTTGGATCTTAAGAAAAATACAGGCCCTGAAGAA 6014448 Query 104684 GAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 104743 || | | | || ||| | || | | ||| |||||||| ||| | || ||||| | Sbjct 6014447 GA-AAGAGCT--CGTGATTTATTTTATGGTCTTTGGATTCCTGATTTATTTATGAAACGT 6014391 Query 104744 GTTGAG-GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA 104802 || ||| ||| | |||||||| | | || || || | ||||| || || Sbjct 6014390 GTAGAGAAAGACT-CTTATTGGTCTTTGATGTGCCCCCACGAATGTCCTGGACTTGAGGA 6014332 Query 104803 TGCCGTGGGTGAGGAGTTTGAAGCCCTTTA-CACAAAGTACG---AGGAAGAAGGT--CG 104856 | | |||||||| ||||| | | || ||| ||||| | | || || || | Sbjct 6014331 TACTTGGGGTGAGGCTTTTGAGGAATTATATCAC-AAGTATGAAAATGAGAAACGTTACA 6014273 Query 104857 GGCGACTGCGACGGTGCCAGCTGCCGATGTGTGG--AAAGCTATTCTCAAGTCTCAAACC 104914 | || | | ||||| | | | ||| |||| | || | || ||||| Sbjct 6014272 GAAAACAAATAAAG-GCCAG----AGTTATTTGGCAAAAGAT-TTGTGAA-AGTCAAATT 6014220 Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 || || || ||||| || ||| |||||||||| ||||| | || ||||||||| | Sbjct 6014219 GAAACCGGAACACCTTATATGGTTTACAAAGATCATTGTAATCGTAAAAGTAATCAACAA 6014160 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA 105034 ||| | || || || |||| ||| | ||||| ||||| | |||| | | | Sbjct 6014159 AATCTTGGAACCATTAAATGTTCAAATTTATGTACTGAAATTGTTGAATATTGTGCACCA 6014100 Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA---TCCA 105091 ||||| ||||| ||||| || | ||| || ||||| | | ||| || | | Sbjct 6014099 GATGAAGTTGCTGTATGTAATCTAGGATCTATTGCTCTTAATAGATTTGTTGAAGTTGTA 6014040 Query 105092 GA-GACAAA--GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAA 105148 || | ||| | ||| ||| || |||| || | ||| | |||| | | || ||| Sbjct 6014039 GATGGTAAACCTGCTTTTAATTTCAAACAACTTCATGTTGTTTCTAAAATTCTAACTAAA 6013980 Query 105149 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCT 105205 || | || | | |||||||| |||| ||| || || ||| || | ||||| Sbjct 6013979 AATTTGAATAAAATTATTGATGTCAATTATTATCCTGTCCCTGA---AGCCAGAAAATCA 6013923 Query 105206 AATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTT 105265 |||||||||||||||||||||||| | |||||||||||| | || |||| ||| || ||| Sbjct 6013922 AATATGAGACACCGTCCAATTGGTATTGGTGTTCAGGGTTTAGCTGATGCATTTATGCTT 6013863 Query 105266 TGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACC 105325 || | | || ||| | || || ||| | ||| | || ||||| || Sbjct 6013862 ATGCGTTATCCTTTCACTTCACCTGCCGCTAAAGAACTTAATAAGTTGATTTTTGAAACA 6013803 Query 105326 ATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATAT 105382 || || || | || | || || |||| || | || || ||||||||| ||| Sbjct 6013802 ATTTACCATGGAGCATTGGAAGC---TTCATGTGAAGTAGCTGAACGTGATGGTCCTTAT 6013746 Query 105383 GAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGT 105442 || || | ||| || ||||||| ||| |||| | ||||||| ||| |||| |||| || Sbjct 6013745 GAGACATATGATGGATCTCCAGTATCAAAAGGTATTCTTCAATATGACATGT-GGAATGT 6013687 Query 105443 GAGACCAA--GCTTCACTACGACTGGGAAGCTCTCAAGGAACGCAT--CAAGGAGAAGGG 105498 | ||||| | || | | || |||||| || | || | | ||| ||| | | || Sbjct 6013686 CAAACCAAGTGATTTA-TGGGATTGGGAAACTTTAAAAGCAGACATTGCAA--AACATGG 6013630 Query 105499 TCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGG 105558 | | | || | | | | |||||||||||||| || || || ||||| || | || Sbjct 6013629 TGTAAGAAATTCTTTATTACTTGCTCCAATGCCAACTGCTTCAACTGCACAGATTCTAGG 6013570 Query 105559 TAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 |||||||||| ||||||| || || | ||||| || Sbjct 6013569 AAATAATGAATCTATTGAACCATATACTTCTAACATTTA 6013531 >seq2 Length=16759152 Score = 93.3 bits (102), Expect = 5e-14 Identities = 242/368 (66%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| | || || | ||| || || ||| | ||||| | ||||| || || || Sbjct 9293313 TCAAATCTTCCAGGTCTAAGAAGTGCACTATCTAACATATCTGCACGATTTGTTGCAGCA 9293254 Query 9587 ATGACAACAATACCTGTTT---CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || |||| || | | || || || |||||||||||| || | | ||| ||| Sbjct 9293253 ATAACAATAACAGAAGATTGTTCAGTACTAAAACCATCCATTTCAACAAGTAATTGATTA 9293194 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGTTGCTTTCCC 9700 | ||| | ||| |||| || | ||||| ||| | |||| | || |||| Sbjct 9293193 AGAGTATTTTCTTGTTCTGAATGACCACCCATACTACCTTTACCACTTCTTTTTCTTCCA 9293134 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || |||||||| || | ||| |||||| ||||| | ||| | |||| Sbjct 9293133 ACAGCATCTATTTCATCAATAAACAAGATACATGGTGAATTTTTTCTAGCCATAGCAAAC 9293074 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 | ||| ||||| | | || |||||||||||||| || | ||| | || | || Sbjct 9293073 ATATCACGTACTCTAGCAGGACCAACACCAACAAACATTTCAAGAAACTCTGATCCAGAT 9293014 Query 9821 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 | || || || ||||||| |||||| ||| ||||| || || | || ||||| Sbjct 9293013 ACTGTTATAAATGGTACATTAGCTTCACCAGCAGTGGCTTTAGCAAGTAATGTTTTACCT 9292954 Query 9881 GTACCTGG 9888 |||||||| Sbjct 9292953 GTACCTGG 9292946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259815747400