Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_028238.1
Length=188534
Score E
Sequences producing significant alignments: (Bits) Value
seq1 86.0 8e-12
>seq1
Length=11693564
Score = 86.0 bits (94), Expect = 8e-12
Identities = 122/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 89216 AGAACTTAGGAGGTGGGCTGATATATTTATTATCGCGCCACTAACGGCTAATACTCTAGC 89275
||| ||| | | |||||||| ||| | || || ||| | || |||||| | ||
Sbjct 2721772 AGAGCTTCGTAAATGGGCTGACGCATTATTAATTGCTCCATTGGATGCAAATACTATGGC 2721713
Query 89276 GAAGATAGCTAATGGTATATGCGACAACTTACTAACTTCTATAGTTAGGGCATGGGATAT 89335
|| ||||| ||||| || || || || ||||| || ||| | || |||||||||||||
Sbjct 2721712 TAAAATAGCAAATGGAATTTGTGATAATTTACTTACATCTCTTGTCAGGGCATGGGATA- 2721654
Query 89336 ATCAAAGCCCCTTATTTTTTG-TCCTGCCATGAATACTCTAATGTGGGA 89383
|| | | || |||||||||| ||| || |||||||| ||||||||
Sbjct 2721653 ATAATAAGCCATTATTTTTTGCTCCAGCAATGAATACATGTATGTGGGA 2721605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603179782132400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |