Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 8e-12 >seq1 Length=11693564 Score = 86.0 bits (94), Expect = 8e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 89216 AGAACTTAGGAGGTGGGCTGATATATTTATTATCGCGCCACTAACGGCTAATACTCTAGC 89275 ||| ||| | | |||||||| ||| | || || ||| | || |||||| | || Sbjct 2721772 AGAGCTTCGTAAATGGGCTGACGCATTATTAATTGCTCCATTGGATGCAAATACTATGGC 2721713 Query 89276 GAAGATAGCTAATGGTATATGCGACAACTTACTAACTTCTATAGTTAGGGCATGGGATAT 89335 || ||||| ||||| || || || || ||||| || ||| | || ||||||||||||| Sbjct 2721712 TAAAATAGCAAATGGAATTTGTGATAATTTACTTACATCTCTTGTCAGGGCATGGGATA- 2721654 Query 89336 ATCAAAGCCCCTTATTTTTTG-TCCTGCCATGAATACTCTAATGTGGGA 89383 || | | || |||||||||| ||| || |||||||| |||||||| Sbjct 2721653 ATAATAAGCCATTATTTTTTGCTCCAGCAATGAATACATGTATGTGGGA 2721605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603179782132400