Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 >seq2 Length=16759152 Score = 111 bits (122), Expect = 1e-19 Identities = 201/294 (68%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 126071 TGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCAC 126130 |||||| || ||||| || ||||| |||||||||| || |||| |||||||| Sbjct 13735824 TGCATCAATGTGATTTTTGTATATATGAGCATCTCCAATAGTGTGAACAAATTCACCTGT 13735883 Query 126131 CTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAA 126190 | | |||||| ||||||||| | ||| || | | || || ||||| || || Sbjct 13735884 AGCTATTCCACAAACTTTTGCAATCATATGAGTTAAAAGAGAGTATGAAGCAATGTTAAA 13735943 Query 126191 AGGAACACCTAAAAATATATCAGCACTTCTTTGATATAATTGACAATTTAATTTACCCTC 126250 |||||||| | | | ||| |||| | |||||| || || ||| |||||| || || Sbjct 13735944 TGGAACACCAAGACCAACATCCCCACTACGTTGATACAAATGGCAACTTAATTCTCCATC 13736003 Query 126251 TTGTACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGT 126310 ||| || ||||||||| | || || || || || || ||||| ||| | |||| Sbjct 13736004 TTGAACATAAAATTGAGCTAAAGTATGACATGGAGGCAAAACCATTTTATCAAGATCAGA 13736063 Query 126311 AGGATTCCATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTTAATTTG 126364 ||||||||||| || | ||| | || || |||||||| || ||||| Sbjct 13736064 TGGATTCCATGCAGATAAAATAATTCTTCTTGAAAAAGGATTGGTCTTTATTTG 13736117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408597727727945