Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 2e-15 >seq2 Length=16759152 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | || || || |||||| |||| || ||| || Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| |||||| || || ||||| |||| || | Sbjct 10682118 GACACCATTGACAAT--GTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATC 10682175 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | || || ||||||||||||||| | || || | | | | | || || |||| Sbjct 10682176 AACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACA 10682235 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||||||||| ||| | ||||||||| | ||| | ||||| || Sbjct 10682236 ATATCCAAAAAGAATCTACTCTTCATTTGGTTCTTCGTCTTCGTGGAGG 10682284 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || | || || ||| |||||| |||| || ||| | Sbjct 10682742 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCT 10682801 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| ||| || || || ||||| |||| || | Sbjct 10682802 GACACCATTGACAAT--GTCAAATCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGACC 10682859 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||||||||| ||||||||| | || || | | | | | || ||||||| Sbjct 10682860 AACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACA 10682919 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | |||||||||||| ||| | || || ||| | ||| | ||||| || Sbjct 10682920 ATATCCAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGG 10682968 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || | || || ||| |||||| |||| || ||| | Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| |||||| |||||| || || ||||| | || || | Sbjct 10681890 GACACTATCGACAAC--GTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACC 10681947 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||||||||| ||||||||| | || || | | | | | || ||||||| Sbjct 10681948 AACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACA 10682007 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||||||| ||| | || || ||| | ||| | ||||| || Sbjct 10682008 ACATTCAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGG 10682056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | || || || |||||| |||| || ||| || Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || ||| ||| || ||||| ||||| |||| || | Sbjct 10683030 GACACCATCGACAAT--GTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATC 10683087 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | || || ||||||||||||||| | || || | | | | | || || || | Sbjct 10683088 AACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATA 10683147 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | |||||||| || ||| | ||||||||| | ||| | ||||| || Sbjct 10683148 ATATCCAAAAGGAATCAACTCTTCATTTGGTTCTTCGTCTTCGTGGAGG 10683196 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || | || || ||| ||||| |||| || ||| | Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | | ||| |||||| ||| || || || ||||| | || || | Sbjct 10683258 GACACTATTGATAAT--GTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATC 10683315 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||||||||||||||| ||| | || || | | | | | || ||||||| Sbjct 10683316 AACAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACA 10683375 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||||||| ||| | ||||||||| | ||| | ||||| || Sbjct 10683376 ACATTCAAAAAGAGTCAACTCTTCATTTGGTTCTCCGTCTTCGTGGAGG 10683424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861814495145