Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 2e-15
>seq2
Length=16759152
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||||||||| || ||| | || || || |||||| |||| || ||| ||
Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| |||||| |||||| || || ||||| |||| || |
Sbjct 10682118 GACACCATTGACAAT--GTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATC 10682175
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
| ||| | || || ||||||||||||||| | || || | | | | | || || ||||
Sbjct 10682176 AACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACA 10682235
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| ||||||||||| ||| | ||||||||| | ||| | ||||| ||
Sbjct 10682236 ATATCCAAAAAGAATCTACTCTTCATTTGGTTCTTCGTCTTCGTGGAGG 10682284
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| |||||||| || || | || || ||| |||||| |||| || ||| |
Sbjct 10682742 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCT 10682801
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| |||||| ||| || || || ||||| |||| || |
Sbjct 10682802 GACACCATTGACAAT--GTCAAATCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGACC 10682859
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
| ||| | ||||||||||| ||||||||| | || || | | | | | || |||||||
Sbjct 10682860 AACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACA 10682919
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| |||||||||||| ||| | || || ||| | ||| | ||||| ||
Sbjct 10682920 ATATCCAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGG 10682968
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| |||||||| || || | || || ||| |||||| |||| || ||| |
Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889
Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| | | |||| |||||| |||||| || || ||||| | || || |
Sbjct 10681890 GACACTATCGACAAC--GTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACC 10681947
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
| ||| | ||||||||||| ||||||||| | || || | | | | | || |||||||
Sbjct 10681948 AACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACA 10682007
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| ||||||||| ||| | || || ||| | ||| | ||||| ||
Sbjct 10682008 ACATTCAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGG 10682056
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||||||||| || ||| | || || || |||||| |||| || ||| ||
Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| || ||| ||| || ||||| ||||| |||| || |
Sbjct 10683030 GACACCATCGACAAT--GTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATC 10683087
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
| ||| | || || ||||||||||||||| | || || | | | | | || || || |
Sbjct 10683088 AACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATA 10683147
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| |||||||| || ||| | ||||||||| | ||| | ||||| ||
Sbjct 10683148 ATATCCAAAAGGAATCAACTCTTCATTTGGTTCTTCGTCTTCGTGGAGG 10683196
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| |||||||| || || | || || ||| ||||| |||| || ||| |
Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257
Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| | | | ||| |||||| ||| || || || ||||| | || || |
Sbjct 10683258 GACACTATTGATAAT--GTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATC 10683315
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
| ||| | ||||||||||||||||| ||| | || || | | | | | || |||||||
Sbjct 10683316 AACAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACA 10683375
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| ||||||||| ||| | ||||||||| | ||| | ||||| ||
Sbjct 10683376 ACATTCAAAAAGAGTCAACTCTTCATTTGGTTCTCCGTCTTCGTGGAGG 10683424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355861814495145
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |