Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq2 172 1e-37
>seq2
Length=16759152
Score = 172 bits (190), Expect = 1e-37
Identities = 173/225 (77%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || | ||||||||| ||||||||||| ||||| ||||| | |||
Sbjct 10682054 TCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAG 10681995
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|||||||||||||| || || || || || || || | | ||||||||| ||||| |
Sbjct 10681994 AGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGAT 10681935
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||||||||| || || || ||| ||| ||||| ||||| |||||||| |||||| ||
Sbjct 10681934 TCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTC 10681875
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || || || || | ||||| ||||| | ||||||
Sbjct 10681874 AAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 172 bits (190), Expect = 1e-37
Identities = 173/225 (77%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || | ||||||||| |||||||||||||| || ||||| | ||
Sbjct 10682966 TCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAG 10682907
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| ||||||||||| || || || || || || || | | ||||||||| |||||||
Sbjct 10682906 AGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAAT 10682847
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||||||||| || ||||||||| ||| || || || ||||||||||| |||||| ||
Sbjct 10682846 TCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTC 10682787
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || || || || | ||||| ||||| | ||||||
Sbjct 10682786 AAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 167 bits (184), Expect = 5e-36
Identities = 172/225 (76%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || | || ||||| || || |||||||| ||||| || | |||
Sbjct 10682738 TCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAG 10682679
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| ||||||||||| || || || || || || || | | |||||| || |||||||
Sbjct 10682678 AGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAAT 10682619
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|||||| ||||| || |||||| ||| || || ||||||||||| || ||| |||||
Sbjct 10682618 TCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACCTC 10682559
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||||||| |||||||| || | |||||| || || | ||||||
Sbjct 10682558 GAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Score = 167 bits (184), Expect = 5e-36
Identities = 172/225 (76%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || | |||||||| || || |||||||| ||||| || | |||
Sbjct 10683194 TCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAG 10683135
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| ||||||||||| || || || || || ||||| | | |||||| || |||||||
Sbjct 10683134 AGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAAT 10683075
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|||||||||||| || |||||| ||| || || ||||||||||| || ||| || ||
Sbjct 10683074 TCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTC 10683015
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || |||||||| || | |||||| ||||| | |||||
Sbjct 10683014 AAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Score = 154 bits (170), Expect = 3e-32
Identities = 169/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || | ||||||||| ||||| |||||||| || || || | ||
Sbjct 10682510 TCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAG 10682451
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| ||||||||||| || || || || || ||||| | | |||||| || |||||||
Sbjct 10682450 AGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAAT 10682391
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||||||||| || || |||||| || ||||| || || |||||||| |||||| ||
Sbjct 10682390 TCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTC 10682331
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || || || || | ||||| ||||| | ||||||
Sbjct 10682330 AAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286
Score = 154 bits (170), Expect = 3e-32
Identities = 169/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || | |||||||| ||||||||||| ||||| ||||| | |||
Sbjct 10683422 TCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAG 10683363
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| |||||||| || || ||||| || || || || | | |||||| || ||||| |
Sbjct 10683362 TGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGAT 10683303
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||||||||| || || |||||| ||| || || || || |||||||| |||||| ||
Sbjct 10683302 TCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTC 10683243
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || || || || | ||||| ||||| | ||||||
Sbjct 10683242 AAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198
Score = 145 bits (160), Expect = 2e-29
Identities = 167/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || | |||||||| || ||||||||||| || || || | ||
Sbjct 10682282 TCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAG 10682223
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| ||||||||||| || || || || || ||||| | | |||||| || || ||||
Sbjct 10682222 AGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAAT 10682163
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||||||||| || || || ||| ||| || || || |||||||| || ||| || ||
Sbjct 10682162 TCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTC 10682103
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || |||||||| || | |||||| ||||| | |||||
Sbjct 10682102 AAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Score = 127 bits (140), Expect = 5e-24
Identities = 163/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || | || ||||| || || |||||||| ||||| || | |||
Sbjct 10681826 TCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAG 10681767
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| ||||||||||| || || || || || || || | | ||||| || |||||||
Sbjct 10681766 AGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAAT 10681707
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|||||| ||||| || |||||| || || || || || ||||| || || |||||
Sbjct 10681706 TCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTC 10681647
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||||| || || || || | |||||| || || | |||||
Sbjct 10681646 AAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602
Score = 113 bits (124), Expect = 1e-19
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| || || ||||| ||||||||||| || || | |||||| ||||| || || || |
Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| || |||||||||||||| || || ||||| |||||||| ||||| || || |||
Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328
Query 211095 GTCTTTACAAACACCTGCATTT 211116
||||| || || | ||||||||
Sbjct 15965327 GTCTTAACGAAAATCTGCATTT 15965306
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| || || ||||| ||||||||||| || || | ||||| || || || ||||| |
Sbjct 14587597 CCGGCAAATATAAGCCGTTGTTGGTCTGGTGGGATACCTTCTTTTTCATGAATCTTAGTT 14587538
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| || || || | || || ||| ||||||||| ||||| || || ||||| || | |
Sbjct 14587537 TTAACATTATCAACTGTATCTGAGGCTTCAACCTCAAGAGTTATTGTTTTTCCAGTTAAA 14587478
Query 211095 GTCTTTACAAACACCTGCATT 211115
|| || ||||| | ||||||
Sbjct 14587477 GTTTTAACAAAAATTTGCATT 14587457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159149995029275
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |