Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 132 3e-26 >seq2 Length=16759152 Score = 132 bits (146), Expect = 3e-26 Identities = 160/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| ||| | || || ||||| || ||||| |||||||| | | Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | ||| ||| || || ||||| | || |||||||| Sbjct 10683258 GACACTATTGATAATGTCAAATC-AAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCA 10683316 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| | ||||| |||||||| || ||||| || || | | | |||||| |||||| Sbjct 10683317 ACAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTT--CTGATTAC 10683374 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| ||||||||||| || | ||||| ||| Sbjct 10683375 AACATTCAAAAAGAGTCAACTCTTCATTTGGTT 10683407 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| ||| | || || ||||| || ||||| |||||||| | | Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | ||| ||||||| || || ||||| | || ||||| ||| Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | ||||| ||||| || |||||||| ||||| | | | ||| | ||||||||| Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||||||||| || | || |||||| Sbjct 10682010 ATTCAAAAAGAGTCAACTCTTCACTTAGTT 10682039 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| ||| | || || ||||| || ||||| |||||||| | | Sbjct 10682286 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10682345 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| || |||| | ||| ||| || || ||||| | || |||||||| Sbjct 10682346 GACACTATTGACAACGTTAAGTC-AAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 10682404 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| |||||||| |||||||| ||||| | | | ||| | || ||||| Sbjct 10682405 ACAAAGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 10682464 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| ||||| || | || |||||| Sbjct 10682465 TATCCAAAAGGAGTCAACTCTTCACTTAGTT 10682495 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || | || ||||| || ||||||||||| || || | | Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| | ||| ||| ||||||||||| | || |||||||| Sbjct 10682574 GACACCATCGACAATGTTAAATC-AAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCA 10682632 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||||| ||||| | | | ||| | || || || Sbjct 10682633 ACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAA 10682692 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || || || | ||||| ||| Sbjct 10682693 TATCCAAAAGGAATCAACTCTCCATTTGGTT 10682723 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| ||| | || || ||||| || ||||| |||||||| | | Sbjct 10682742 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCT 10682801 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | ||| || || || ||||| | || ||||| || Sbjct 10682802 GACACCATTGACAATGTCAAATC-AAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCA 10682860 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||||| ||||| | | | ||| | |||||||| Sbjct 10682861 ACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAA 10682920 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||||||||| || | || |||||| Sbjct 10682921 TATCCAAAAAGAGTCAACTCTTCACTTAGTT 10682951 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || | || || ||||| |||||||| || || || | | Sbjct 10681602 ATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCC 10681661 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | ||| ||| ||||||||||| | || |||||||| Sbjct 10681662 GACACTATTGACAATGTCAAGTC-AAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCA 10681720 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | ||||| ||||| || |||||||| ||||| | | | ||| | || || || Sbjct 10681721 ACAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAA 10681780 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || || || | ||||| ||| Sbjct 10681781 TATCCAAAAGGAATCAACTCTCCATTTGGTT 10681811 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || ||||| || || ||||| ||||| || | | Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| |||||| || || || ||||| | || |||||||| Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAA-TTCAAGATAAGGAAGGAATTCCACCAGATCA 10682176 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| |||||||| ||||| | | | ||| | || ||||| Sbjct 10682177 ACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 10682236 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| || || | ||||| ||| Sbjct 10682237 TATCCAAAAAGAATCTACTCTTCATTTGGTT 10682267 Score = 105 bits (116), Expect = 5e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| |||||||| | || |||||||| || ||||| || ||||| || | Sbjct 14587457 AATGCAAATTTTTGTTAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAAGCCTC 14587516 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || ||||| ||| ||||||| || | || ||| ||||||||| | || ||||| | Sbjct 14587517 AGATACAGTTGATAATGTTAAAACTAAGA-TTCATGAAAAAGAAGGTATCCCACCAGACC 14587575 Query 23729 AACAGCGTTTAATATTTGCCGG 23750 |||| || | ||||||||||| Sbjct 14587576 AACAACGGCTTATATTTGCCGG 14587597 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || ||||| || || ||||| ||||| || | | Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| |||| | || ||||| ||||| | || |||||||| Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGA-TTCAAGACAAGGAAGGAATTCCTCCAGATCA 10683088 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| |||||||| ||||| | | | ||| | || || || Sbjct 10683089 ACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAA 10683148 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || || || | ||||| ||| Sbjct 10683149 TATCCAAAAGGAATCAACTCTTCATTTGGTT 10683179 Score = 95.1 bits (104), Expect = 8e-15 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||||||||||||||||||| || || || || || || |||||||| || || || | Sbjct 15965306 AAATGCAGATTTTCGTTAAGACTCTTACTGGTAAGACCATCACTCTTGAGGTCGAGCCAT 15965365 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 | ||||| | |||| ||||| |||||| ||||||||||| | || ||||| | Sbjct 15965366 CAGACACCATCGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACC 15965425 Query 23729 AACAGCGTTTAATATTTGCCGG 23750 |||| ||| | || |||||||| Sbjct 15965426 AACAACGTCTTATTTTTGCCGG 15965447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009043868580