Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq2 132 3e-26
>seq2
Length=16759152
Score = 132 bits (146), Expect = 3e-26
Identities = 160/213 (75%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| ||||| ||| | || || ||||| || ||||| |||||||| | |
Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| ||| | ||| | ||| ||| || || ||||| | || ||||||||
Sbjct 10683258 GACACTATTGATAATGTCAAATC-AAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCA 10683316
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787
||| | ||||| |||||||| || ||||| || || | | | |||||| ||||||
Sbjct 10683317 ACAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTT--CTGATTAC 10683374
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820
||||| ||||||||||| || | ||||| |||
Sbjct 10683375 AACATTCAAAAAGAGTCAACTCTTCATTTGGTT 10683407
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| ||||| ||| | || || ||||| || ||||| |||||||| | |
Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| | || | | ||| ||||||| || || ||||| | || ||||| |||
Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | ||||| ||||| || |||||||| ||||| | | | ||| | |||||||||
Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||||||||| || | || ||||||
Sbjct 10682010 ATTCAAAAAGAGTCAACTCTTCACTTAGTT 10682039
Score = 125 bits (138), Expect = 5e-24
Identities = 156/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| ||||| ||| | || || ||||| || ||||| |||||||| | |
Sbjct 10682286 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10682345
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| || |||| | ||| ||| || || ||||| | || ||||||||
Sbjct 10682346 GACACTATTGACAACGTTAAGTC-AAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 10682404
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | ||||| |||||||| |||||||| ||||| | | | ||| | || |||||
Sbjct 10682405 ACAAAGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 10682464
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||| ||||| || | || ||||||
Sbjct 10682465 TATCCAAAAGGAGTCAACTCTTCACTTAGTT 10682495
Score = 122 bits (134), Expect = 6e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||||||||| || | || ||||| || ||||||||||| || || | |
Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| ||||| | ||| ||| ||||||||||| | || ||||||||
Sbjct 10682574 GACACCATCGACAATGTTAAATC-AAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCA 10682632
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | ||||| ||||| || |||||||| ||||| | | | ||| | || || ||
Sbjct 10682633 ACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAA 10682692
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||| || || || | ||||| |||
Sbjct 10682693 TATCCAAAAGGAATCAACTCTCCATTTGGTT 10682723
Score = 122 bits (134), Expect = 6e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| ||||| ||| | || || ||||| || ||||| |||||||| | |
Sbjct 10682742 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCT 10682801
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | ||| || || || ||||| | || ||||| ||
Sbjct 10682802 GACACCATTGACAATGTCAAATC-AAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCA 10682860
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | ||||| ||||| || |||||||| ||||| | | | ||| | ||||||||
Sbjct 10682861 ACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAA 10682920
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||||||||| || | || ||||||
Sbjct 10682921 TATCCAAAAAGAGTCAACTCTTCACTTAGTT 10682951
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||||||||| || | || || ||||| |||||||| || || || | |
Sbjct 10681602 ATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCC 10681661
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| ||| | || | ||| ||| ||||||||||| | || ||||||||
Sbjct 10681662 GACACTATTGACAATGTCAAGTC-AAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCA 10681720
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||| | ||||| ||||| || |||||||| ||||| | | | ||| | || || ||
Sbjct 10681721 ACAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAA 10681780
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||| || || || | ||||| |||
Sbjct 10681781 TATCCAAAAGGAATCAACTCTCCATTTGGTT 10681811
Score = 107 bits (118), Expect = 1e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || || || | || ||||| || || ||||| ||||| || | |
Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| |||||| || || || ||||| | || ||||||||
Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAA-TTCAAGATAAGGAAGGAATTCCACCAGATCA 10682176
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || |||||||| |||||||| ||||| | | | ||| | || |||||
Sbjct 10682177 ACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 10682236
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| |||||||| || || | ||||| |||
Sbjct 10682237 TATCCAAAAAGAATCTACTCTTCATTTGGTT 10682267
Score = 105 bits (116), Expect = 5e-18
Identities = 110/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||| |||||||| | || |||||||| || ||||| || ||||| || |
Sbjct 14587457 AATGCAAATTTTTGTTAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAAGCCTC 14587516
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || ||||| ||| ||||||| || | || ||| ||||||||| | || ||||| |
Sbjct 14587517 AGATACAGTTGATAATGTTAAAACTAAGA-TTCATGAAAAAGAAGGTATCCCACCAGACC 14587575
Query 23729 AACAGCGTTTAATATTTGCCGG 23750
|||| || | |||||||||||
Sbjct 14587576 AACAACGGCTTATATTTGCCGG 14587597
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || || || | || ||||| || || ||||| ||||| || | |
Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| ||||| |||| | || ||||| ||||| | || ||||||||
Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGA-TTCAAGACAAGGAAGGAATTCCTCCAGATCA 10683088
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || |||||||| |||||||| ||||| | | | ||| | || || ||
Sbjct 10683089 ACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAA 10683148
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||| || || || | ||||| |||
Sbjct 10683149 TATCCAAAAGGAATCAACTCTTCATTTGGTT 10683179
Score = 95.1 bits (104), Expect = 8e-15
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668
||||||||||||||||||| || || || || || || |||||||| || || || |
Sbjct 15965306 AAATGCAGATTTTCGTTAAGACTCTTACTGGTAAGACCATCACTCTTGAGGTCGAGCCAT 15965365
Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
| ||||| | |||| ||||| |||||| ||||||||||| | || ||||| |
Sbjct 15965366 CAGACACCATCGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACC 15965425
Query 23729 AACAGCGTTTAATATTTGCCGG 23750
|||| ||| | || ||||||||
Sbjct 15965426 AACAACGTCTTATTTTTGCCGG 15965447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009043868580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |