Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 1e-12 >seq2 Length=16759152 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTG 101094 ||| | |||||| ||||||||||| |||||||| | | ||| | |||||| | ||| Sbjct 10682033 GTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCAAGTTG 10681974 Query 101095 TTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTT 101154 ||| || ||| | || | |||||||||||| || | ||||| || || |||||| Sbjct 10681973 TTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTT 10681914 Query 101155 TTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTTTTGCCC 101212 | ||| || | | | | || || | | ||| ||| | ||||||||||| || Sbjct 10681913 TGATTTGACGTTGTCGATAGTGTCAGATG--GTTCAACTTCAAGAGTAATAGTTTTACCT 10681856 Query 101213 GTCAATGTTTTAATAAAAATTTGCAT 101238 || || || |||| |||||| ||||| Sbjct 10681855 GTTAAGGTCTTAACAAAAATCTGCAT 10681830 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| || | ||| ||||||||||| |||||||| || | | |||| | |||||| Sbjct 10682266 ACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682207 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | |||||| || ||| | || | |||||||| ||| || | ||||| || || | Sbjct 10682206 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTGA 10682147 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTTT 101207 |||||| ||| |||| | | | || || | | ||| | ||| | |||||||| | Sbjct 10682146 ATTTTTGATTTGACATTGTCAATGGTGTCGGATG--GTTCTACTTCAAGAGTAATAGTCT 10682089 Query 101208 TGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | || || || || || | |||||||||||| Sbjct 10682088 TTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTG 101094 ||| | |||||| |||||||| ||||||||||| | | |||| | |||||| | ||| Sbjct 10682945 GTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTG 10682886 Query 101095 TTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTT 101154 ||| || ||| | || | |||||||||||| || | ||||| || || || || Sbjct 10682885 TTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTT 10682826 Query 101155 TTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTTTTGCCC 101212 | ||| |||| | | | || || | | ||| ||| | ||||||||||| || Sbjct 10682825 TGATTTGACATTGTCAATGGTGTC--AGAAGGTTCAACTTCAAGAGTAATAGTTTTACCT 10682768 Query 101213 GTCAATGTTTTAATAAAAATTTGCAT 101238 || || || |||| |||||| ||||| Sbjct 10682767 GTTAAGGTCTTAACAAAAATCTGCAT 10682742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| || | ||||||||| ||||| ||||| || || | | |||| | |||||| Sbjct 10681810 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10681751 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | |||||| || ||| | || | || ||||| ||| || | ||||||||||| | Sbjct 10681750 AGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10681691 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 || ||| || |||| | | | || || | | | | || | || ||||||||| Sbjct 10681690 ATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTTG 10681631 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || ||||| || |||| ||||||||||| Sbjct 10681630 CCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| || | ||||||||| ||||| ||||| || || | | |||| | |||||| Sbjct 10683178 ACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10683119 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | |||||| || ||| | || | |||||||| ||| || | ||||| ||||| | Sbjct 10683118 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGA 10683059 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTTT 101207 || ||| ||| |||| | | | || || | | ||| | ||| | |||||||| | Sbjct 10683058 ATCTTTGATTTAACATTGTCGATGGTGTCGGATG--GTTCTACTTCAAGAGTAATAGTCT 10683001 Query 101208 TGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | || || || || || | |||||||||||| Sbjct 10683000 TTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409660125979965