Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_030240.1
Length=128058
Score E
Sequences producing significant alignments: (Bits) Value
seq2 87.8 1e-12
>seq2
Length=16759152
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTG 101094
||| | |||||| ||||||||||| |||||||| | | ||| | |||||| | |||
Sbjct 10682033 GTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCAAGTTG 10681974
Query 101095 TTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTT 101154
||| || ||| | || | |||||||||||| || | ||||| || || ||||||
Sbjct 10681973 TTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTT 10681914
Query 101155 TTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTTTTGCCC 101212
| ||| || | | | | || || | | ||| ||| | ||||||||||| ||
Sbjct 10681913 TGATTTGACGTTGTCGATAGTGTCAGATG--GTTCAACTTCAAGAGTAATAGTTTTACCT 10681856
Query 101213 GTCAATGTTTTAATAAAAATTTGCAT 101238
|| || || |||| |||||| |||||
Sbjct 10681855 GTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089
|||| || | ||| ||||||||||| |||||||| || | | |||| | ||||||
Sbjct 10682266 ACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682207
Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149
| |||||| || ||| | || | |||||||| ||| || | ||||| || || |
Sbjct 10682206 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTGA 10682147
Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTTT 101207
|||||| ||| |||| | | | || || | | ||| | ||| | |||||||| |
Sbjct 10682146 ATTTTTGATTTGACATTGTCAATGGTGTCGGATG--GTTCTACTTCAAGAGTAATAGTCT 10682089
Query 101208 TGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238
| || || || || || | ||||||||||||
Sbjct 10682088 TTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTG 101094
||| | |||||| |||||||| ||||||||||| | | |||| | |||||| | |||
Sbjct 10682945 GTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTG 10682886
Query 101095 TTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTT 101154
||| || ||| | || | |||||||||||| || | ||||| || || || ||
Sbjct 10682885 TTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTT 10682826
Query 101155 TTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTTTTGCCC 101212
| ||| |||| | | | || || | | ||| ||| | ||||||||||| ||
Sbjct 10682825 TGATTTGACATTGTCAATGGTGTC--AGAAGGTTCAACTTCAAGAGTAATAGTTTTACCT 10682768
Query 101213 GTCAATGTTTTAATAAAAATTTGCAT 101238
|| || || |||| |||||| |||||
Sbjct 10682767 GTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089
|||| || | ||||||||| ||||| ||||| || || | | |||| | ||||||
Sbjct 10681810 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10681751
Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149
| |||||| || ||| | || | || ||||| ||| || | ||||||||||| |
Sbjct 10681750 AGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10681691
Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209
|| ||| || |||| | | | || || | | | | || | || |||||||||
Sbjct 10681690 ATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTTG 10681631
Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238
|| ||||| || |||| |||||||||||
Sbjct 10681630 CCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/211 (69%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089
|||| || | ||||||||| ||||| ||||| || || | | |||| | ||||||
Sbjct 10683178 ACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10683119
Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149
| |||||| || ||| | || | |||||||| ||| || | ||||| ||||| |
Sbjct 10683118 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGA 10683059
Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTTT 101207
|| ||| ||| |||| | | | || || | | ||| | ||| | |||||||| |
Sbjct 10683058 ATCTTTGATTTAACATTGTCGATGGTGTCGGATG--GTTCTACTTCAAGAGTAATAGTCT 10683001
Query 101208 TGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238
| || || || || || | ||||||||||||
Sbjct 10683000 TTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 409660125979965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |