Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 282 4e-71 >seq2 Length=16759152 Score = 282 bits (312), Expect = 4e-71 Identities = 515/749 (69%), Gaps = 4/749 (1%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| ||||| || ||||| || ||| || || |||||||| ||||| || || | Sbjct 14764749 AACACCGAATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAAT 14764690 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 |||||||| ||||||||||||| || || | | || ||| ||||| ||| || || Sbjct 14764689 TGAAATATTAACCATAAAATCAAAGGGGTTCTTAACATTATAAAGTTTTGAACAATTAAG 14764630 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | || | ||| ||||||||||| |||| ||||| | ||| | |||| || Sbjct 14764629 TTCCACCAACAAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCAT 14764570 Query 4427 TCCAATTAATCTCA-CAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485 |||||| | | ||| |||| || || | ||| | | || | ||| ||| || || | Sbjct 14764569 TCCAATCA-TATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCAT 14764511 Query 4486 CTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATA 4545 | | || || |||||||| |||| ||||||||| ||| | | ||| | ||||| | Sbjct 14764510 TTTTAATAATTTCTTTTATACGTTCTTCAGATGGTTTGTTTTCAAGGTAACTAAACATAA 14764451 Query 4546 AACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTA 4605 || || ||||||| || || || || ||||| ||||| ||| || ||| || | Sbjct 14764450 GGCAGGCGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCA 14764391 Query 4606 ATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGA 4665 |||| ||||| ||||| | || || ||||||||||| | |||||||| |||||||||| Sbjct 14764390 ATCCTGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGA 14764331 Query 4666 ATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCT 4724 | || ||||| || || ||||| || | | ||| || || | ||| | || || Sbjct 14764330 AGATACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTC-TTATCA 14764272 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 |||||| |||| ||||| | ||||||||| | | | |||| | || ||| Sbjct 14764271 GCGATCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCA 14764212 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 ||||| | ||| || |||| ||| | ||||| || || || ||| |||| Sbjct 14764211 TTAAAAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTGAATAC 14764152 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 || ||| || |||||||| || ||||| || || || || ||| | | || || | Sbjct 14764151 ATCTCACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGA 14764092 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 | ||||||||| ||| ||||||| || || || || || || || ||||| ||| || Sbjct 14764091 ATTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCG 14764032 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAA 4993 ||||| || || || ||| | || ||||| Sbjct 14764031 GCAAAGAAAGCTAAGACACGTGAAATAAA 14764003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048897369955