Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 856 0.0 seq2 657 0.0 >seq1 Length=11693564 Score = 856 bits (948), Expect = 0.0 Identities = 1484/2138 (69%), Gaps = 57/2138 (3%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || |||||||| | || || ||||| |||||||||| || | |||| | | ||| Sbjct 6013174 GCAGGTTTTGTTCTTAAGTAATACATTCCAGTTTTTAATCCACGTTTCCAACTATGAAAA 6013233 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| | ||| ||| || | || | ||||| ||| | ||| || | Sbjct 6013234 TGCATTGAACTACAAATGGCATATGATGGTTTAGCAACATGAAGATTAAGCGATTGTGAT 6013293 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| || ||||| || | |||||| ||||| | || || ||||||| |||||| Sbjct 6013294 TGATCTATAAAAGCACCACGATCAGCAGCCATCTCAATTATATCTTTTTGAGATATTTCC 6013353 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAA 77039 |||| |||||| ||| || ||| |||| | ||||| | | || ||||| || || Sbjct 6013354 CAAACAGTTTTATAAAGTTCTTTAATATTAGGTGGAATTTCTTTAATATTTTGGATAGAT 6013413 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 ||| || | ||| || |||| ||| || ||| |||| | || || ||||| Sbjct 6013414 CCATTATTAGCTATTATCTCATTCATTAACTCTTCACTCCATATGTTAAGATCAATTAAA 6013473 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 || |||| ||||||||||| || ||||| || ||||| || | || | | ||||||| Sbjct 6013474 TCTTTAAGAAGATGAGGATTGACAATTTGGAAATCTCCTGAAAGAACACGTCTAGTGTAA 6013533 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 || ||| ||||||||||| | ||||||||| ||||| | ||| || ||||| |||||| Sbjct 6013534 ATGTTAGAAGTATATGGTTCAATAGATTCATTATTTCCTAGAATCTGTGCAGTTGAAGCA 6013593 Query 77220 GTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTT 77279 |||||||| || || | |||||| |||||| | ||||||| || || | ||||| Sbjct 6013594 GTTGGCATTGGAGCAAGTAATAAAGAATTTCTTACACCATGTTTTGCAATGTCTGCTTTT 6013653 Query 77280 AGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATT 77339 | | || ||||||||| | ||| ||| |||| ||| | || ||||| ||||| Sbjct 6013654 AAAGTTTCCCAATCCCATAAATCACTTGGTTTGACATTCCACATGTCATATTGAAGAATA 6013713 Query 77340 CC----GTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAG 77395 || | |||| | ||||||| |||||| |||||||| || || |||||||| Sbjct 6013714 CCTTTTGATACTGG----AGATCCATCATATGTCTCATAAGGACCATCACGTTCAGCTAC 6013769 Query 77396 TTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC 77455 |||||| |||||||||||||| | ||||||||||| |||||| |||||| || || Sbjct 6013770 TTCACATGAAGCTTCCAATGCTCCATGGTAAATTGTTTCAAAAATCAACTTATTAAGTTC 6013829 Query 77456 TTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTG 77515 || || || | || |||||| | | ||| ||||| ||||| ||||| ||||| Sbjct 6013830 TTTAGCGGCAGGTGAAGTGAAAGGATAACGCATAAGCATAAATGCATCAGCTAAACCCTG 6013889 Query 77516 AACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATA 77575 ||| ||||||||||| || | |||||| |||| || || | ||||| || | |||||| Sbjct 6013890 AACACCAATACCAATTGGACGGTGTCTCATATTTGATTTTCTGGCTTCAGGGACAGGATA 6013949 Query 77576 ATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTT---AACCACGTCCTT 77632 |||||| | || ||||||||||| | |||| || | | ||| ||| || | Sbjct 6013950 ATAATTGACATCAATAATTTTATTCAAATTTTTAGTTAGAATTTTAGAAACAACATGAAG 6014009 Query 77633 TAGTTT---AAGAAAATCAAATCTTCCATCTA------TAACAAACATGTTCAAAGCTAT 77683 | |||| | |||| || | | ||||||| |||||| | || | ||| || Sbjct 6014010 TTGTTTGAAATTAAAAGCAGGTTTACCATCTACAACTTCAACAAATCTATTAAGAGCAAT 6014069 Query 77684 AGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGC-ATATTGTATTATCTCGGTAC 77742 |||| |||||||||| || || || |||| | || | ||||| | || || |||| Sbjct 6014070 AGATCCTAGATTACATACAGCAACTTCATCTG-GTGCACAATATTCAACAATTTCAGTAC 6014128 Query 77743 ATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAG 77801 ||| ||| |||||| || || || ||||||||||| || || || ||| | |||| Sbjct 6014129 ATAAATTTGAACATTTAATGGTTCCAAGATTTTGTTGATTACTTTTACGATTACAATGA- 6014187 Query 77802 TCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAG 77861 || || |||| ||| | || || ||||||||||| || ||| ||| || ||| Sbjct 6014188 TCTTTGTAAACCATATAAGGTGTTCCGGTTTCAATTTGACTTTCACAAATCTTTTGCCAA 6014247 Query 77862 ACGACTCTAGCTTTTATCATAGATT--TGTATCGCCTCTCTCTTTCATA-TTGAGTATAT 77918 | ||||| || ||||| | | || |||| || |||| ||||||| ||| | |||| Sbjct 6014248 ATAACTCTGGCCTTTAT--TTGTTTTCTGTAACGTTTCTCATTTTCATACTTGTG-ATAT 6014304 Query 77919 AGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATC 77978 | ||||| | || |||||| ||| || | |||||| ||||| | ||||||||| Sbjct 6014305 AATTCCTCAAAAGCCTCACCCCAAGTATCCTCAAGTCCAGGACATTCGTGGGGGCACATC 6014364 Query 77979 AATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCA 78038 || ||||| | | |||| || || ||||||||||| | |||||| ||||| ||| || Sbjct 6014365 AAAGACCAATAAGAGTCTTTCTCTACACGTTTCATAAATAAATCAGGAATCCAAAGACCA 6014424 Query 78039 ATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAAC 78098 ||||| ||| || | ||| | ||||||| |||||||| || |||||||| | ||| Sbjct 6014425 TAAAATAAATCACGAGCTCTTTCTTCTTCAGGGCCTGTATTTTTCTTAAGATCCAAAAAT 6014484 Query 78099 TCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTA 78158 || | ||| |||| ||||||||||||||||||||| || | ||||||||| |||||| Sbjct 6014485 TCTAAAATGTCAGCATGCCATGGTTCTAGATATATAGCAAATGCTCCAGGTCTTTTATTT 6014544 Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || || || | ||| | || || || ||| |||||||||||||||| || | || Sbjct 6014545 CCCCCTTGGTCAACATAGCGTGCTGTATTGTTAAAAACTCTCAACATTGGTATTAATCCA 6014604 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||| ||| |||| || ||| | || |||||| |||| | Sbjct 6014605 TTAGATGTACCATTTGTACCACCAATAAAAGAACCATTAGCACGAATA----CAATGAAC 6014660 Query 78279 AT----CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTA 78334 || || || || || || || || |||| || || |||| | ||||| || Sbjct 6014661 ATTCAATCCAATACCGCCAGCAGATTTTGAAATTAATGCACATTGTTTAAGAGTATCATA 6014720 Query 78335 GATACCCTCTATACTGTCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGAT 78393 ||||| || || ||||| || ||||| ||| ||||| ||||| || || Sbjct 6014721 TATACCTTCAATTGAATCATCAGACATTGTTAGTAAG-AAACACGAAGACAGCTGTGGAC 6014779 Query 78394 GAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGT 78452 | |||||||||||||||||||| ||||| ||||| |||||||| || | ||| | | Sbjct 6014780 GTCTGGTTCCTGCATTAAATAATGTTGGAGAGGCATGAGTAAACCACTTCTGAGACATAT 6014839 Query 78453 AGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGC 78512 || | |||||||||||| | || | || || ||||||||| || || |||||| Sbjct 6014840 AG-TCATATGTTTCAATAACAGAATTAATATCATCCCCATGAATTCCAACTGCCACACGC 6014898 Query 78513 ATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTT 78572 || || | ||| || ||||||||| | || ||||||||| || | ||||| | Sbjct 6014899 ATTAATAAATGTTGTGGTCTTTCAGCAACTTTCCCATTTATTTTTAATAGATATGAACGT 6014958 Query 78573 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAA 78632 || | || ||||| |||||||| | | ||| ||||| | |||| ||| ||||| Sbjct 6014959 TCAAGTGTCTTAAATCCAAAATAAGAGAAATCAAAATCTCTGTTATAAACGATAGCAGAA 6015018 Query 78633 TTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGT------AGTTGAAATAATA 78686 || |||||||| | ||| | | || | || ||| | || || || Sbjct 6015019 TTAAGTTTATCAGCATGTTTTTTGATGATGT---TGTGAGTTTCCTCACTT---ATCATT 6015072 Query 78687 GGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTA 78746 || | |||| || || || || | ||||||| |||| || ||| | || | Sbjct 6015073 GGCAAATGTACTCCTGTTACAGAATGACGATAGTTATATAAGTCACTCATAGCTTCTGAA 6015132 Query 78747 AATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCA 78806 || ||| ||||||| || || | |||||| ||||| |||||||||||||| |||||| Sbjct 6015133 AAACTTTTCTTTGTTTGTTTATGCATATTAGAAACAGCAATTCTTGCAGCTAGTATAGCA 6015192 Query 78807 TAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCT 78866 ||||| ||||| ||| || | | || | | ||| || |||||| ||||||| || Sbjct 6015193 TAATCTGGATGAATTGTCGTCATACTTGCAGAAACTTCAGCAGCTAAATTATCTAATTCA 6015252 Query 78867 ATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 | |||| || |||||||| | |||||| |||||||| Sbjct 6015253 ACTGTTGATACACCATTATACAATCCTTGGATAACTTT 6015290 >seq2 Length=16759152 Score = 657 bits (728), Expect = 0.0 Identities = 1391/2052 (68%), Gaps = 49/2052 (2%) Strand=Plus/Minus Query 76800 GATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAG 76859 || || ||||| || | || ||| ||||| || ||||||| || | ||||||| || Sbjct 8586477 GAAGCTGGTTTAGTTCTTAAATAATACATTCCCGTTTTTAAGCCACGTTTCCATCCATAA 8586418 Query 76860 AAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGA 76919 |||||||| | | | |||| | || | || || || | | | || ||| Sbjct 8586417 AAATGCATTGAACTACATATACCATAAGTTGGTTTACTTAGATAAAGACTAAGTGATTGA 8586358 Query 76920 CTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATT 76979 |||||| || |||| || | |||||| |||||| |||||| ||||| | |||| Sbjct 8586357 GATTGATCAATAAAAGGCCCCCGATCAGCAGCCATTCCAATAATGTCTTTTTGTGAAATT 8586298 Query 76980 TCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATG 77036 ||||| | |||||| ||| || || ||| || | ||||| | | ||||||||||| Sbjct 8586297 TCCCATACAGTTTTATAAAGTTCTTGGATGTCTTTTGGAATATCAGGTATATTTTGAATG 8586238 Query 77037 GAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTT 77096 || ||| || | || ||| |||| || | |||||||| | || || Sbjct 8586237 GATCCATTATTTTCAATTATTTTATTGAGTAATCCTTCATTCCAAATATTAAGAGAAATT 8586178 Query 77097 AAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTG 77156 ||| | | || ||||||| ||| || | |||||| |||||||| || |||| | || Sbjct 8586177 AAATCACGTAGAAGATGAGTATTTACAACTTGAAAATCTCCAGATAAAACTCGCCTTGTA 8586118 Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 || |||||| ||||||||||| | ||||||||||||||| | |||||||| ||||| Sbjct 8586117 TATATATTAGAAGTATATGGTTCAATAGATTCATTGTTTCCAAGAATTTGAGATGTAGAT 8586058 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTAT-C 77275 || || ||||| || || | ||||| ||| | |||||| | | |||| | | Sbjct 8586057 GCTGTAGGCATTGGAGCAATTAATAATGAATTGCGAAGACCAAAACGTATAATTTCTTGC 8585998 Query 77276 TTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAG 77335 ||| | |||| ||| ||||| | ||| || | ||||| ||| | ||| || || || Sbjct 8585997 TTTAAAATATC-CCATTCCCATAAATCACTTGGAATAACATTCCACATATCATACTGAAG 8585939 Query 77336 AATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAG 77395 |||||| || || || | || ||||||||||| ||| | | | | | Sbjct 8585938 AATTCCTTTGGATGCTGGAGAATCTTTGAATGTTTCATAACATCCATACTTCTTTGACAA 8585879 Query 77396 TTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC 77455 |||||| ||||| | ||| || | |||||| ||||| ||||| || |||| ||||| Sbjct 8585878 TTCACAGGAAGCTTCAAGTGCACCATGATAAATAGTTTCAAAAATTTTTATATTAAGATC 8585819 Query 77456 TTGTGCTTCAA-TACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCT 77514 || ||||| | | | ||| ||||| | ||| | ||| | ||| || | ||| | Sbjct 8585818 TTTAGCTTCTGGTGATGTGAAA-GGATACCTCATAAGCAAAAATGTATCAGCAAGTCCTT 8585760 Query 77515 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGAT 77574 |||| ||||| ||||| || | ||| | ||| || | ||||||| | |||| Sbjct 8585759 GAACACCAATTCCAATTGGACGATGCTTAAGATTTGATAAACGAGCTTCTTCTAGTGGAT 8585700 Query 77575 AATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTA 77634 || ||||||| || ||||||||||| | |||||| || | ||| ||| || | | Sbjct 8585699 AAAAATTAATATCAATAATTTTATTTAAATTTCTTGTTACAATTTTTGTCACATCATGAA 8585640 Query 77635 GTTTAAGAAAATCAAATCT---------TCCATCTATAACAA---ACATGTTCAAAGCTA 77682 | | ||| |||||| | | | | |||||||| |||| || | || | Sbjct 8585639 GCATTTTAAAGTCAAATGTAGGTTTTTTTTCTTTTATAACAACAAACATATTAAGTGCAA 8585580 Query 77683 TAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTAC 77742 | ||||||| ||||||||| || || || | | |||||| || || || |||| Sbjct 8585579 TTGATGCTAAATTACAAACAGCAACTTCGCTTGGAGAACAATATTGAATAATTTCAGTAC 8585520 Query 77743 ATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAG 77801 ||||||| |||| | || || || | ||||||||| || || || ||| || ||| Sbjct 8585519 ATAGATTTGAACATCTAATCGTTCCTAAATTTTGTTGATTACTTTTACGATTACAATGA- 8585461 Query 77802 TCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAG 77861 || ||||||| ||| | ||| | || ||||||||||| ||||| ||| | ||| Sbjct 8585460 TCTTTATAAACCATATATGGAATACCAGTTTCAATCTGAGATTCACAAATTTTCTGCCAA 8585401 Query 77862 ACGACTCTAGCTTTTATCATAGATTT--GTATCGCCTCTCTCTTTCATATTGAGTATATA 77919 || | |||||||||||| | | ||| | | | | || ||||||||| | |||| | Sbjct 8585400 ACAAATCTAGCTTTTAT--TTGCTTTCGGAACCTTTTTTCATTTTCATATTTAATATAAA 8585343 Query 77920 GCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCA 77979 | ||||||| ||| || || || ||| | || || ||||||| || ||||| | Sbjct 8585342 GTTCATCAAATTTATCACCAAAACAATTATCAAGACCTGGACATTCATAAGGACACATTA 8585283 Query 77980 ATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAA 78039 ||||||| | | ||| | | ||| ||||||||||| | ||| || | ||| || || Sbjct 8585282 ATGACCAATGAAGATCCTGTTCAACACGTTTCATAAATAAATCTGGAACCCAAAGTCCAT 8585223 Query 78040 TAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACT 78099 ||||| ||| || | ||| |||||| ||||| || ||| | | ||| | ||| | Sbjct 8585222 AAAATAAATCACGAGCTCTTGCTTCTTCTGGACCTGTGTTTTTTCTTAAATCTAAAAATT 8585163 Query 78100 CCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTAC 78159 |||| ||||||| |||||||||||| | || ||||| | | |||||||||||||||| Sbjct 8585162 CCATTATATCAGCATGCCATGGTTCCAAGTAGATTGCAAATGCCCCAGGTCGTTTATTAC 8585103 Query 78160 CTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 78219 | |||||||| | ||| | || || |||||||||| | |||||||| || | ||| | Sbjct 8585102 CACCCTGATCAACATAACGAGCAGTACTATTATAAACACGTAACATTGGTATTAAACCAT 8585043 Query 78220 TAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATA 78279 | |||| |||||||||||| | |||| | ||||| || ||||| | || || Sbjct 8585042 TTGATGATCCATTTGTTCCTGCAATAAATGTTCCAGAAGCACGAATTCCAGAGATACTTA 8584983 Query 78280 TCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATAC 78339 || |||||||| || || || |||| ||| || ||||||| || || || || | Sbjct 8584982 ATCCAATTCCTCCGGCAGATTTTGAAATTATAGCACATTGTTTCAAAGTGTCATAAATTC 8584923 Query 78340 CCTCTATACTGTCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 78398 | || ||| ||||| || |||||| || |||||| || | ||| | || | Sbjct 8584922 CTTCAATAGAATCATCAGCCATTGTTAATAA-AAAACATGACGATAATTGTGCACGAGAA 8584864 Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGAT-T 78457 |||||||||||||||||||| || || ||||| |||||||||||| ||| | || || Sbjct 8584863 GTTCCTGCATTAAATAATGTTGGGGAAGCATGAATAAACCATTTTTTAGACA-TATATAA 8584805 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||| |||||||| || | || || | ||||||| ||| ||||| ||||| || Sbjct 8584804 ATATGTCTCAATAGCAGAAGCAATATCTTCTCTATGAATTGCTATAGCTACTCGCATTAA 8584745 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||||| ||||||||||| || | |||| ||| ||| | || || |||||| ||| | Sbjct 8584744 CATATATTGAGGTCTTTCCACAATTTTATCATTGATTCTTAATAAATATGATCGTTCTAG 8584685 Query 78578 AGTTTTAAAACCAAAATA-GTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTA 78636 ||| |||| |||||||| || || |||| ||| | || | |||||| || | | Sbjct 8584684 TGTTCTAAATCCAAAATATGTAAAATTAAAA-TCTTTTTCATTTTCAATAACTGAGTCAA 8584626 Query 78637 GTTTATCTT---TGTATTTGGTAACAAT---ATCCATGACAGTAGTTGAAATAATAGGAG 78690 |||| | || ||| | || || ||| || || | ||||| || | |||| Sbjct 8584625 GTTT-TATTGAATGTTTCTG--AATAATTTCATTTATTTCTTTAGTT---ATCAAAGGAC 8584572 Query 78691 ATCGTACACCATT---TTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAA 78747 | || |||| | ||| | || ||| ||| ||||||| | ||| || ||| || Sbjct 8584571 AATGTTCACCTGTCACATTATGTTT---ATAATTATATAAATCATTCATAACTTCAGAAA 8584515 Query 78748 ATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCAT 78807 || ||||| |||| || || | ||| | | || || | || |||| | ||| Sbjct 8584514 ATTTATTTTTAGTTTGTTTATGCAAATTTGTAATGGCAATACGAGCTGCTAATTTTTCAT 8584455 Query 78808 AATCAGGATGTT 78819 |||||||||||| Sbjct 8584454 AATCAGGATGTT 8584443 Score = 203 bits (224), Expect = 5e-47 Identities = 545/819 (67%), Gaps = 27/819 (3%) Strand=Plus/Minus Query 47826 TCTTCTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTA 47885 || ||| ||||||||| || | ||| ||||||||| || |||||| || ||||| Sbjct 14764763 TCATCTGTAGACATAACACCGAATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTT 14764704 Query 47886 GTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtt 47945 ||||| || || | ||| ||||| ||||||||||||| || || ||||||||| | Sbjct 14764703 GTTTTTCCCTCAATTGAAATATTAACCATAAAATCAAAGGGGTTCTTAACATTATAAAGT 14764644 Query 47946 tttttA-AATCCTAA-TTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCA 48003 ||| | ||| ||| ||| | || || || || |||| |||||| | || Sbjct 14764643 TTTGAACAAT--TAAGTTCCACCAACAAATGGTCAGCTACATATTCAATATATGTA--CA 14764588 Query 48004 TCATTTCAC---AATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTT 48060 |||| || | |||||||| || | | ||| || ||||| || ||||| | || | Sbjct 14764587 -CATTAAACGTGAGTTCATTCCAATCATATCAACAGGAAGAGCATCTGTAAGGTATTCCT 14764529 Query 48061 GTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGT--GGATA 48118 ||| ||| || |||| || || | ||| ||| ||| |||| | | Sbjct 14764528 TTTCAATATCAACTGCATTTTTAATAATTTCTTTTATACGTTCTTCAGATGGTTTGTTTT 14764469 Query 48119 CAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAAT 48178 ||| | | |||||| | || || ||||||| || | || |||||||| ||| Sbjct 14764468 CAAGGTAACT--AAACATAAGGCAGGCGAAATCACGGTGTAATCCCTCATCTCTTGAAAT 14764411 Query 48179 TAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGC 48238 ||||| || ||| ||| | || ||||| | |||||||| || ||||||||||| | Sbjct 14764410 CAATTCATTGGAATGTGTCAATCCTGGCATCAAACCACGTTTCTTCAGCCAAAATATGGA 14764351 Query 48239 CGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC 48298 || || || ||||||||||| || ||||| || || ||||| || ||| || ||||| Sbjct 14764350 AGCAAATGAACCAGAAAAGAAGATACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCC 14764291 Query 48299 GTAACTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACA 48355 || | || | || | ||||| | | ||||||||||| || || | | | | Sbjct 14764290 AAAAGTAGCATTCTTATCAGCGATCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAA 14764231 Query 48356 AGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGT 48415 || | |||| |||||||| ||||||| ||| || | | | ||||| | Sbjct 14764230 TGGAAACTCATCTAAAGCATTAA----AAAGTTTCATTCTTTCGTCATTGTCACGTATAT 14764175 Query 48416 ATCTAT-TAAAAGACT---ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATC 48471 | | | | ||| | |||||| || |||||||||||| || || || || || | Sbjct 14764174 AGGTTTCGATAAGTTTTGAATACATCTCACTGTGAATATTTTCCATGGCAATTTGGAAAC 14764115 Query 48472 CGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCT 48531 | || || | | || || | || || || || || |||||| || ||||||||| Sbjct 14764114 CATAGAAGAAACGTGCCTCGGGAATTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCT 14764055 Query 48532 CATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTT 48591 |||| || || |||||| ||| ||||| || ||||| ||| || ||||||| | | Sbjct 14764054 CATTAACAATACCATCAGAAGCGGCAAAGAAAGCTAAGACACGTGAAATAAAAAAACGCT 14763995 Query 48592 CGTTGGAAGTCAGTTTATT-CCAGTCATTGATATCTTTT 48629 | ||| |||| || ||| |||||| | ||||||||| Sbjct 14763994 CATTGTCTGTCA-TTGATTCCCAGTCTCTCATATCTTTT 14763957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667627746400