Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq2 152 1e-31
>seq2
Length=16759152
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | |||||||||||| ||||||||||| ||||| || | | |||||| ||||||
Sbjct 10682269 AGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCT 10682210
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| ||||| ||||| | || || || || | | ||||||||||| |||
Sbjct 10682209 TCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCT 10682150
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||||||| ||||||| | || | | |||| || ||||||||||||||||||||
Sbjct 10682149 TGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTC 10682090
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || | |||||| || || | |||||
Sbjct 10682089 TTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961
|||||||| |||||||||||||| |||||||| | | |||||| |||||||| || |
Sbjct 10682944 TGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGT 10682885
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| || || || || | || || ||||| | | ||||||||||| ||||| || |||
Sbjct 10682884 TTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTT 10682825
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081
||||||| | || | | |||| ||| || |||||||||||||||||||| || ||
Sbjct 10682824 GATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTTACCTGTT 10682765
Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || || | ||||||
Sbjct 10682764 AAGGTCTTAACAAAAATCTGCAT 10682742
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961
|||||||| ||||||||||| ||||||||||| | | ||| || |||||||| || |
Sbjct 10682032 TGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCAAGTTGT 10681973
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| || || || || | || || ||||| | | |||||||||||| ||||||||||||
Sbjct 10681972 TTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTTT 10681913
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081
|||||| | || | |||| || || |||||||||||||||||||| || ||
Sbjct 10681912 GATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTT 10681853
Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || || | ||||||
Sbjct 10681852 AAGGTCTTAACAAAAATCTGCAT 10681830
Score = 134 bits (148), Expect = 3e-26
Identities = 160/215 (74%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || | ||||||||| ||||||||||| ||||||||||| | | ||||| |||||
Sbjct 10683410 GAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATC 10683351
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
|| || ||||| ||||| || || | || || || || | | ||||||||||||
Sbjct 10683350 CTCAAGTTGCTTT--CCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTA 10683293
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|||||||| ||| ||||||| | || | |||| || || ||||||||||||||
Sbjct 10683292 TCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATG 10683233
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || || | ||||| || || | ||||||
Sbjct 10683232 GTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||||||||| || || |||||||| || || || | | |||||| ||||||
Sbjct 10683181 AGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCT 10683122
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| ||||| ||||| | || || || || | | ||||||||||| |||
Sbjct 10683121 TCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCT 10683062
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| ||| ||| ||| | || | | |||| || ||||||||||||||||||||
Sbjct 10683061 TGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTC 10683002
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || | |||||| || || | |||||
Sbjct 10683001 TTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| ||||| || || |||||||| || || || | | |||||| ||||||
Sbjct 10681813 AGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCT 10681754
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| || || || || | ||||| || || | | |||||||| || |||
Sbjct 10681753 TCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCT 10681694
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| ||| |||||| | || | |||| ||| |||||| |||||||| ||||||
Sbjct 10681693 TGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTT 10681634
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || | |||||| ||||| | |||||
Sbjct 10681633 TTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602
Score = 123 bits (136), Expect = 6e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961
|||||||| ||||| |||||||| ||||| || | | |||||| |||||||| || |
Sbjct 10682488 TGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGT 10682429
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| ||||| ||||| | || || || || | | ||||||||||| |||||||| |||
Sbjct 10682428 TTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTT 10682369
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081
|| || | || | |||| || || |||||||||||||||||||| || ||
Sbjct 10682368 GACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTT 10682309
Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || || | ||||||
Sbjct 10682308 AAGGTCTTAACAAAAATCTGCAT 10682286
Score = 98.7 bits (108), Expect = 2e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024
||||| || ||||| | || ||||| | | ||||||||| || ||||||||||| |
Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388
Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084
|| ||| | || | | ||||||| ||| || |||||||| || || || || || |||
Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328
Query 152085 GTCTTCACGAAGACCTGCATTT 152106
||||| ||||| | ||||||||
Sbjct 15965327 GTCTTAACGAAAATCTGCATTT 15965306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153818804250585
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |