Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2 152 1e-31 >seq2 Length=16759152 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||||||||| ||||||||||| ||||| || | | |||||| |||||| Sbjct 10682269 AGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCT 10682210 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| ||||| | || || || || | | ||||||||||| ||| Sbjct 10682209 TCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCT 10682150 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||| ||||||| | || | | |||| || |||||||||||||||||||| Sbjct 10682149 TGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTC 10682090 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| || || | ||||| Sbjct 10682089 TTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| |||||||||||||| |||||||| | | |||||| |||||||| || | Sbjct 10682944 TGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGT 10682885 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || | || || ||||| | | ||||||||||| ||||| || ||| Sbjct 10682884 TTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTT 10682825 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| | || | | |||| ||| || |||||||||||||||||||| || || Sbjct 10682824 GATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTTACCTGTT 10682765 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || | |||||| Sbjct 10682764 AAGGTCTTAACAAAAATCTGCAT 10682742 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| ||||||||||| ||||||||||| | | ||| || |||||||| || | Sbjct 10682032 TGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCAAGTTGT 10681973 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || | || || ||||| | | |||||||||||| |||||||||||| Sbjct 10681972 TTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTTT 10681913 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | |||| || || |||||||||||||||||||| || || Sbjct 10681912 GATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTT 10681853 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || | |||||| Sbjct 10681852 AAGGTCTTAACAAAAATCTGCAT 10681830 Score = 134 bits (148), Expect = 3e-26 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||||||||| ||||||||||| ||||||||||| | | ||||| ||||| Sbjct 10683410 GAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATC 10683351 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| ||||| || || | || || || || | | |||||||||||| Sbjct 10683350 CTCAAGTTGCTTT--CCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTA 10683293 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 |||||||| ||| ||||||| | || | |||| || || |||||||||||||| Sbjct 10683292 TCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATG 10683233 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | ||||| || || | |||||| Sbjct 10683232 GTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| || || |||||||| || || || | | |||||| |||||| Sbjct 10683181 AGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCT 10683122 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| ||||| | || || || || | | ||||||||||| ||| Sbjct 10683121 TCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCT 10683062 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| ||| ||| | || | | |||| || |||||||||||||||||||| Sbjct 10683061 TGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTC 10683002 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| || || | ||||| Sbjct 10683001 TTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| ||||| || || |||||||| || || || | | |||||| |||||| Sbjct 10681813 AGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCT 10681754 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | ||||| || || | | |||||||| || ||| Sbjct 10681753 TCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCT 10681694 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| |||||| | || | |||| ||| |||||| |||||||| |||||| Sbjct 10681693 TGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTT 10681634 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| ||||| | ||||| Sbjct 10681633 TTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| ||||| |||||||| ||||| || | | |||||| |||||||| || | Sbjct 10682488 TGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGT 10682429 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| ||||| | || || || || | | ||||||||||| |||||||| ||| Sbjct 10682428 TTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTT 10682369 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || | || | |||| || || |||||||||||||||||||| || || Sbjct 10682368 GACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTT 10682309 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || | |||||| Sbjct 10682308 AAGGTCTTAACAAAAATCTGCAT 10682286 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||| || ||||| | || ||||| | | ||||||||| || ||||||||||| | Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| | || | | ||||||| ||| || |||||||| || || || || || ||| Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328 Query 152085 GTCTTCACGAAGACCTGCATTT 152106 ||||| ||||| | |||||||| Sbjct 15965327 GTCTTAACGAAAATCTGCATTT 15965306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818804250585