Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq2 181 2e-40
>seq2
Length=16759152
Score = 181 bits (200), Expect = 2e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || ||||| |||| ||| | || ||| |||||||| || |||||||
Sbjct 10682741 ACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGA 10682682
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || | ||||| || |||||||| || ||||| || || | |||||| || ||
Sbjct 10682681 AAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGG 10682622
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || || |||||||| ||||||| ||| || | ||||| ||||| || | ||| ||
Sbjct 10682621 AATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTAC 10682562
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||||||||| ||||| || ||||||||||||||||| ||||||||
Sbjct 10682561 CTCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Score = 178 bits (196), Expect = 3e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || ||||| |||| ||| | || ||| |||||||| || |||||||
Sbjct 10683197 ACCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGA 10683138
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || | ||||| || |||||||| |||||||||||||| | |||||| || ||
Sbjct 10683137 AAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGG 10683078
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||||||||| ||||||| ||| || | ||||| ||||| || | ||| ||
Sbjct 10683077 AATTCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTAC 10683018
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| ||||| || ||||| || || |||||||| || || || |||||
Sbjct 10683017 TTCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Score = 168 bits (186), Expect = 1e-36
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || ||||| |||| ||| | || |||||||||||| ||||||||||
Sbjct 10682285 ACCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGA 10682226
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || | ||||| || |||||||| |||||||||||||| | |||||| || ||
Sbjct 10682225 GAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGG 10682166
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||| ||||| || |||| ||| || | || || ||||| || | ||| ||
Sbjct 10682165 AATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTAC 10682106
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| ||||| || ||||| || || |||||||| || || || |||||
Sbjct 10682105 TTCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || ||||| |||| ||| | || ||| |||||||| || |||||||
Sbjct 10681829 ACCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGA 10681770
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || | ||||| || |||||||| || ||||| || || | ||||| || ||
Sbjct 10681769 AAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGG 10681710
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || || |||||||| ||||||| || || | || |||||||| |||| || ||
Sbjct 10681709 AATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTAC 10681650
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| || || || ||||||||||||||||| || |||||
Sbjct 10681649 CTCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || ||||| || | || | || |||||||| |||||||| ||||
Sbjct 10682057 ACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGA 10681998
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || | ||||| || |||||||| || ||||| || || | ||||||||| ||
Sbjct 10681997 AAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGG 10681938
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| || ||||| ||||| || |||| ||| ||| | ||||||||||| || | ||| ||
Sbjct 10681937 GATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAAC 10681878
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| ||||| || || ||||| || || |||||||| || ||||||||
Sbjct 10681877 TTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || ||||| || | || | || || |||||||| ||||||||||
Sbjct 10682513 ACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGA 10682454
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || | ||||| || |||||||| ||||||||||| || | |||||| || ||
Sbjct 10682453 GAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGG 10682394
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||| ||||| ||||||| || ||| | || |||||||| || | ||| ||
Sbjct 10682393 AATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAAC 10682334
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| ||||| || || ||||| || || |||||||| || ||||||||
Sbjct 10682333 TTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || ||||| || | || | || ||||||||||| ||||| ||||
Sbjct 10682969 ACCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGA 10682910
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || | ||||| || |||||||| || ||||| || || | ||||||||| ||
Sbjct 10682909 GAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGG 10682850
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||| ||||||||||||| ||| || | || || ||||| |||| ||| ||
Sbjct 10682849 AATTCCTTCCTTATCTTGGATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAAC 10682790
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| ||||| || || ||||| || || |||||||| || ||||||||
Sbjct 10682789 TTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 125 bits (138), Expect = 1e-23
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|||||||| || | |||||||||||| || || || || |||||||| || || |||
Sbjct 15965447 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCT 15965388
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | ||||| ||||| || | ||||| || |||||||| |||||||| || | |
Sbjct 15965387 TTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGAGTGATGGTCTTACCAGTAAGA 15965328
Query 283080 GTCTTAACGAATATCTGCATTT 283101
||||||||||| ||||||||||
Sbjct 15965327 GTCTTAACGAAAATCTGCATTT 15965306
Score = 120 bits (132), Expect = 6e-22
Identities = 257/383 (67%), Gaps = 6/383 (2%)
Strand=Plus/Minus
Query 43984 CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACT 44043
|| || || || || || | || ||||| ||||| || ||||| |||| ||||| ||
Sbjct 11787803 CAGGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATTCCACAAAAAGAAACAACA 11787744
Query 44044 CCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAA 44103
|| |||||||| | ||||| |||| || || || ||||||| | |||||| ||||
Sbjct 11787743 CCATTTTATCCTAGAAGTCCTTATGCAGTAGCAAAATTATATGCATTTTGGATAATTAAA 11787684
Query 44104 AATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGT 44163
|||||||| || | ||||| || || | ||||||| || | || ||||| |||
Sbjct 11787683 AATTATCGTGAAGCATATGGAATTTTTGCTTGTAATGGAATATTATTTAATCATGAATCA 11787624
Query 44164 CCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATATTTTC 44223
|| | |||||| || | || || || | ||||| || | ||| || || || |||
Sbjct 11787623 CCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGAGCTGTAGCTAAAATTAAT 11787564
Query 44224 AACGG---GACAGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGA 44280
| || ||||| || | | ||| || || | || ||||| | ||||||||
Sbjct 11787563 ATAGGTGTTCAAGAAACAT---TATCTCTTGGTAATTTGGATGCTAAACGTGATTGGGGC 11787507
Query 44281 TATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAGACAGGTCAGACGAC 44340
|||| || |||||||| || |||||| || | ||||| || |||| ||
Sbjct 11787506 CATGCAAAAGAGTATGTAGAGGCAATGTGGAGAATCCTCCAACATGATGTAGCAGATGAT 11787447
Query 44341 TACGTTATTGCAACTGGAAAGAC 44363
| ||||| | || ||||| ||
Sbjct 11787446 TTTGTTATATCTACAGGAAAAAC 11787424
Score = 91.5 bits (100), Expect = 3e-13
Identities = 115/157 (73%), Gaps = 1/157 (1%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|||||||| || | ||||||||||| || ||||| || || || || ||||| | |
Sbjct 14587597 CCGGCAAATATAAGCCGTTGTTGGTCTGGTGGGATACCTTCTTTTTCATGAATCTTAGTT 14587538
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || |||| | || || || ||||| || || ||||| || || || || || |||
Sbjct 14587537 TTAACATTATCAACTGTATCTGAGGCTTCAACCTCAAGAGTTATTGTTTTTCCAGTTAAA 14587478
Query 283080 GTCTTAACGAATATCTGCATT-TTCATATACAAATAT 283115
|| ||||| || || |||||| || |||| ||||||
Sbjct 14587477 GTTTTAACAAAAATTTGCATTATTTCTATAAAAATAT 14587441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046737389468290
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