Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 295 7e-75 seq1 116 4e-21 >seq2 Length=16759152 Score = 295 bits (326), Expect = 7e-75 Identities = 544/787 (69%), Gaps = 13/787 (2%) Strand=Plus/Minus Query 23161 TAAAAATCTTCATCTAAAGTGAATTTCAC-TGCTTTATCACTATTCATAACACCCATTTT 23219 || ||||| |||| || || || ||| | ||| ||| || ||||||||| | ||| Sbjct 14764796 TAGAAATCGGCATCCAATGTAAAAA-CACGTTCTTCATCTGTAGACATAACACCGAATTT 14764738 Query 23220 TTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTC 23279 |||||||| ||| | | || || |||||||| || ||||| | ||| ||||| | Sbjct 14764737 CTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATATTAAC 14764678 Query 23280 CATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAA--TTCCTTTAAA 23337 |||||||||||| || || | |||||| | | ||| | || | |||| || Sbjct 14764677 CATAAAATCAAAGGGGTTCTTAACATTATAAA--GTTTTGAACAATTAAGTTCCACCAAC 14764620 Query 23338 AGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGT 23397 | || |||||| ||||||||||| |||||| ||| |||| || || || | Sbjct 14764619 AAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAATCATA 14764560 Query 23398 TTTACTGGAATCGCATCATATAAGA-ATAGTTTTTCAATGGAAACAGCATCTTTAATTAT 23456 | || |||| ||||| | |||| || |||||||| ||| |||| |||||| || Sbjct 14764559 TCAACAGGAAGAGCATC-TGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATAAT 14764501 Query 23457 TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAA--TACTTAAACAATAAACATGCA 23514 || ||| ||||||| ||| | |||| || || |||||| | || || Sbjct 14764500 TTCTTTTATACGTTCTTCAGATGGTT--TGTTTTCAAGGTAACTAAACATAAGGCAGGCG 14764443 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 ||||||| |||| || ||||| || |||||||||||| ||| ||| ||||||||| Sbjct 14764442 AAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGC 14764383 Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCC 23634 || || || ||||| || | ||||||||| | ||||||||| || |||||||| ||||| Sbjct 14764382 ATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGATACCT 14764323 Query 23635 TCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAt 23694 |||||||| ||||| || | || ||| ||||| || ||||| | ||||| |||||| Sbjct 14764322 TCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTATCAGCGATCCAT 14764263 Query 23695 ttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGA 23754 || | ||||| ||| || | | | | | || || | || || || || Sbjct 14764262 CTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAAAAAGT 14764203 Query 23755 AAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAA 23814 || |||| ||||| || |||||| || || || ||| |||||| ||| Sbjct 14764202 TTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTGAATACATCTCACTG 14764143 Query 23815 TGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACA 23874 ||||||||||| || ||||| || || ||||| || | | || || | | |||||| Sbjct 14764142 TGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTTGAACT 14764083 Query 23875 TCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAA 23934 || ||| ||||||| | | ||||| || ||||||||||||||| ||| ||||||||| Sbjct 14764082 TCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGGCAAAGAAA 14764023 Query 23935 GC-AAGA 23940 || |||| Sbjct 14764022 GCTAAGA 14764016 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 139435 CTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATG 139494 || ||||||||| ||||||||||||| |||||| | ||| |||| |||||| Sbjct 16012439 CTTCATACAAAAGCTTGGATTGTTGATGGAAAACATTTTTATGTTGGTTCTGCTAATCAA 16012380 Query 139495 GACTGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAATTCTTGT 139554 || ||| ||||| |||| ||||| ||||| ||||| | | || |||| | ||||| Sbjct 16012379 GATTGGAGATCATTAACACAAGTTAAAGAGTTAGGAGTTGCTGCTTTTAATTGTCCTTGT 16012320 Query 139555 ATTGCTAGTGAACTAATGAAAATATTT 139581 ||||| ||| || |||||| |||| Sbjct 16012319 CTTGCTGCTGA--TATTGAAAAAATTT 16012295 >seq1 Length=11693564 Score = 116 bits (128), Expect = 4e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 139429 GGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCT 139488 ||||| |||||||||||||||||||||||||| | |||||||| |||||||| ||||| Sbjct 581596 GGTGTTTTACATACAAAATTTTGGATTGTTGATCAAAAACATATTTATATTGGTAGTGCA 581537 Query 139489 AACATGGACTGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAAT 139548 || ||||| ||| |||| ||||| |||| ||||| | ||| | ||| | ||| | Sbjct 581536 AATATGGATTGGAAATCATTAACTGAAGTTAAAGAGATGGGTGTATTAATAGAAAATTGT 581477 Query 139549 TCTTGTATTGCTAGTGAACTAATGAAAATATTTAACATATAT 139590 |||||| | || ||| || |||||||||| | | ||| Sbjct 581476 TCTTGTTTAGCACATGATTTACATAAAATATTTATCGTTTAT 581435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487119989000