Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq2 295 7e-75
seq1 116 4e-21
>seq2
Length=16759152
Score = 295 bits (326), Expect = 7e-75
Identities = 544/787 (69%), Gaps = 13/787 (2%)
Strand=Plus/Minus
Query 23161 TAAAAATCTTCATCTAAAGTGAATTTCAC-TGCTTTATCACTATTCATAACACCCATTTT 23219
|| ||||| |||| || || || ||| | ||| ||| || ||||||||| | |||
Sbjct 14764796 TAGAAATCGGCATCCAATGTAAAAA-CACGTTCTTCATCTGTAGACATAACACCGAATTT 14764738
Query 23220 TTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTC 23279
|||||||| ||| | | || || |||||||| || ||||| | ||| ||||| |
Sbjct 14764737 CTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATATTAAC 14764678
Query 23280 CATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAA--TTCCTTTAAA 23337
|||||||||||| || || | |||||| | | ||| | || | |||| ||
Sbjct 14764677 CATAAAATCAAAGGGGTTCTTAACATTATAAA--GTTTTGAACAATTAAGTTCCACCAAC 14764620
Query 23338 AGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGT 23397
| || |||||| ||||||||||| |||||| ||| |||| || || || |
Sbjct 14764619 AAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAATCATA 14764560
Query 23398 TTTACTGGAATCGCATCATATAAGA-ATAGTTTTTCAATGGAAACAGCATCTTTAATTAT 23456
| || |||| ||||| | |||| || |||||||| ||| |||| |||||| ||
Sbjct 14764559 TCAACAGGAAGAGCATC-TGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATAAT 14764501
Query 23457 TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAA--TACTTAAACAATAAACATGCA 23514
|| ||| ||||||| ||| | |||| || || |||||| | || ||
Sbjct 14764500 TTCTTTTATACGTTCTTCAGATGGTT--TGTTTTCAAGGTAACTAAACATAAGGCAGGCG 14764443
Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574
||||||| |||| || ||||| || |||||||||||| ||| ||| |||||||||
Sbjct 14764442 AAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGC 14764383
Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCC 23634
|| || || ||||| || | ||||||||| | ||||||||| || |||||||| |||||
Sbjct 14764382 ATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGATACCT 14764323
Query 23635 TCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAt 23694
|||||||| ||||| || | || ||| ||||| || ||||| | ||||| ||||||
Sbjct 14764322 TCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTATCAGCGATCCAT 14764263
Query 23695 ttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGA 23754
|| | ||||| ||| || | | | | | || || | || || || ||
Sbjct 14764262 CTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAAAAAGT 14764203
Query 23755 AAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAA 23814
|| |||| ||||| || |||||| || || || ||| |||||| |||
Sbjct 14764202 TTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTGAATACATCTCACTG 14764143
Query 23815 TGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACA 23874
||||||||||| || ||||| || || ||||| || | | || || | | ||||||
Sbjct 14764142 TGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTTGAACT 14764083
Query 23875 TCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAA 23934
|| ||| ||||||| | | ||||| || ||||||||||||||| ||| |||||||||
Sbjct 14764082 TCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGGCAAAGAAA 14764023
Query 23935 GC-AAGA 23940
|| ||||
Sbjct 14764022 GCTAAGA 14764016
Score = 82.4 bits (90), Expect = 8e-11
Identities = 107/147 (73%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 139435 CTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATG 139494
|| ||||||||| ||||||||||||| |||||| | ||| |||| ||||||
Sbjct 16012439 CTTCATACAAAAGCTTGGATTGTTGATGGAAAACATTTTTATGTTGGTTCTGCTAATCAA 16012380
Query 139495 GACTGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAATTCTTGT 139554
|| ||| ||||| |||| ||||| ||||| ||||| | | || |||| | |||||
Sbjct 16012379 GATTGGAGATCATTAACACAAGTTAAAGAGTTAGGAGTTGCTGCTTTTAATTGTCCTTGT 16012320
Query 139555 ATTGCTAGTGAACTAATGAAAATATTT 139581
||||| ||| || |||||| ||||
Sbjct 16012319 CTTGCTGCTGA--TATTGAAAAAATTT 16012295
>seq1
Length=11693564
Score = 116 bits (128), Expect = 4e-21
Identities = 123/162 (76%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 139429 GGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCT 139488
||||| |||||||||||||||||||||||||| | |||||||| |||||||| |||||
Sbjct 581596 GGTGTTTTACATACAAAATTTTGGATTGTTGATCAAAAACATATTTATATTGGTAGTGCA 581537
Query 139489 AACATGGACTGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAAT 139548
|| ||||| ||| |||| ||||| |||| ||||| | ||| | ||| | ||| |
Sbjct 581536 AATATGGATTGGAAATCATTAACTGAAGTTAAAGAGATGGGTGTATTAATAGAAAATTGT 581477
Query 139549 TCTTGTATTGCTAGTGAACTAATGAAAATATTTAACATATAT 139590
|||||| | || ||| || |||||||||| | | |||
Sbjct 581476 TCTTGTTTAGCACATGATTTACATAAAATATTTATCGTTTAT 581435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521487119989000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |