Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq2 91.5 1e-13
>seq2
Length=16759152
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186
|||| ||||| || ||||||||||| || || || | ||||| | | || |
Sbjct 10683178 ACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTT--CTTCCATCTT 10683121
Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246
| || || || |||||||||||||| | || ||||||| ||| | |||||||| ||
Sbjct 10683120 CAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTT 10683061
Query 44247 TTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| || || || || | |||||||||| | ||| || || | ||||| |||
Sbjct 10683060 GAATCTT-TGATTTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTC 10683002
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || | ||||| || || ||||||||
Sbjct 10683001 TTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/212 (69%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||||| || || |||||||| ||||| || | ||| | | || ||
Sbjct 10682266 ACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682207
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| || || |||||||||||||| | || ||||||| || | |||||||| | | |
Sbjct 10682206 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTAT-CTTG 10682148
Query 44249 ATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
| || || || || ||| | |||||||||| | ||| || || | ||||| |||
Sbjct 10682147 AATTTTTGATTTGACATTGT--CAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTC 10682090
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || | ||||| || || ||||||||
Sbjct 10682089 TTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359989807703295
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |