Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq2 161 1e-34 >seq2 Length=16759152 Score = 161 bits (178), Expect = 1e-34 Identities = 466/718 (65%), Gaps = 18/718 (3%) Strand=Plus/Minus Query 155745 GATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAATTTTTAGTTTCAACG 155804 |||||||| ||||||||||| ||||| | |||||| || |||||||||||| Sbjct 490742 GATTGAGCTGCGCGTACCAAACCTTCAATTTCAGCACCAGAAAAATTTTTAGTTTTCTTA 490683 Query 155805 GCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGATTTCATTTTAGCAACG 155864 || ||| || | || || || | ||||| | || | | |||||||||| | Sbjct 490682 GCAATTGCTTTAATATCAACATCAGGTCCTAATTTATTATATTCTCTCATTTTAGCTGTG 490623 Query 155865 TGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAAT 155924 || | | ||||||||| | ||| || |||||||| ||||| |||||| || | | | Sbjct 490622 TGAATGTGTAAAATTTGTACACGTCCATTTTCATCTGGTAAAGAAATTTCCATTTGAACT 490563 Query 155925 TCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCT 155984 |||| | || |||||||| || ||||| ||||| | || ||| || |||||||| Sbjct 490562 TCCATTCTTCCTGGTCTTAACAAAGCTTCATCAATCATATCTTTTCTATTTGTCATACCA 490503 Query 155985 ATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACT 156044 || | |||||| || ||||| || ||||| || ||||| | ||| | |||||| ||| Sbjct 490502 ATAACTAAAATATTATTTAATTGATCAACACCATCCATTTTTGTCAAAATTTGATTAACT 490443 Query 156045 ACGGCGTCGTG----------CGT--GGCGTTATCACCGCGTTTTTTACACAGAGCATCT 156092 || | || || | | || | | || | || |||||| | |||||| Sbjct 490442 ACAGTATCATGAACACTGGAACTTCCAGCTTGAGTTCCTCTTTGTTTACAAATAGCATCA 490383 Query 156093 ATTTCATCGAAGACGATAACGTGTAATCCGCTGGCTAA--ACCCAATTTNNNNNNNNNNN 156150 |||||||| || | || | ||||| |||| | | || || | Sbjct 490382 ATTTCATCAAAAATAATTATATGTAA--AGCTGAATTATTTCCACATCTTTTAAATTCTT 490325 Query 156151 NNNNAGCCTCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTA 156210 ||| || ||| ||| ||| | |||||||| |||||| |||||||| | || Sbjct 490324 CTTCAGCATCACCAAATAATTTTCTTATATTAGCTTCACTTTCACCAACATATTTATCTA 490265 Query 156211 ATAATTCAGGACCGTTAACTATTTTGACGGGTCGTG-ATTTAAAAGCTTGAGCGATACAG 156269 | | || || || || || ||||| || | |||||| | || | || Sbjct 490264 AAATTTGTGGTCCATTTACAATTTTAGGTTCTCTAGCATTTAACA-TTTTTCCTATTTGA 490206 Query 156270 CGAGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGT 156329 || || ||||| |||||||| ||||| ||||| || | || | || | ||| Sbjct 490205 CGGGCTATTAAAGTTTTACCAGTACCAGGTGGTCCATAAAGTAAAATACCACGAACGTGT 490146 Query 156330 TTACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGA 156389 || ||||||| |||| | ||| |||| | |||| | ||||||||||| | Sbjct 490145 TTCATGCCTAATTGTTCAACTTGTTCAGGTGGAAATAATCTACTAAAAAATGCTCTTCTA 490086 Query 156390 AAAATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT 156447 || ||| ||||||||||||||| || || || | ||||| ||||||| ||||| Sbjct 490085 AAGATGGCAGAAAATTCTTTATCTAAACCACCAATTCCCATACTTTCAAAATCCCAAT 490028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667074074310600