Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_033423.1
Length=208501
Score E
Sequences producing significant alignments: (Bits) Value
seq2 161 1e-34
>seq2
Length=16759152
Score = 161 bits (178), Expect = 1e-34
Identities = 466/718 (65%), Gaps = 18/718 (3%)
Strand=Plus/Minus
Query 155745 GATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAATTTTTAGTTTCAACG 155804
|||||||| ||||||||||| ||||| | |||||| || ||||||||||||
Sbjct 490742 GATTGAGCTGCGCGTACCAAACCTTCAATTTCAGCACCAGAAAAATTTTTAGTTTTCTTA 490683
Query 155805 GCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGATTTCATTTTAGCAACG 155864
|| ||| || | || || || | ||||| | || | | |||||||||| |
Sbjct 490682 GCAATTGCTTTAATATCAACATCAGGTCCTAATTTATTATATTCTCTCATTTTAGCTGTG 490623
Query 155865 TGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAAT 155924
|| | | ||||||||| | ||| || |||||||| ||||| |||||| || | | |
Sbjct 490622 TGAATGTGTAAAATTTGTACACGTCCATTTTCATCTGGTAAAGAAATTTCCATTTGAACT 490563
Query 155925 TCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCT 155984
|||| | || |||||||| || ||||| ||||| | || ||| || ||||||||
Sbjct 490562 TCCATTCTTCCTGGTCTTAACAAAGCTTCATCAATCATATCTTTTCTATTTGTCATACCA 490503
Query 155985 ATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACT 156044
|| | |||||| || ||||| || ||||| || ||||| | ||| | |||||| |||
Sbjct 490502 ATAACTAAAATATTATTTAATTGATCAACACCATCCATTTTTGTCAAAATTTGATTAACT 490443
Query 156045 ACGGCGTCGTG----------CGT--GGCGTTATCACCGCGTTTTTTACACAGAGCATCT 156092
|| | || || | | || | | || | || |||||| | ||||||
Sbjct 490442 ACAGTATCATGAACACTGGAACTTCCAGCTTGAGTTCCTCTTTGTTTACAAATAGCATCA 490383
Query 156093 ATTTCATCGAAGACGATAACGTGTAATCCGCTGGCTAA--ACCCAATTTNNNNNNNNNNN 156150
|||||||| || | || | ||||| |||| | | || || |
Sbjct 490382 ATTTCATCAAAAATAATTATATGTAA--AGCTGAATTATTTCCACATCTTTTAAATTCTT 490325
Query 156151 NNNNAGCCTCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTA 156210
||| || ||| ||| ||| | |||||||| |||||| |||||||| | ||
Sbjct 490324 CTTCAGCATCACCAAATAATTTTCTTATATTAGCTTCACTTTCACCAACATATTTATCTA 490265
Query 156211 ATAATTCAGGACCGTTAACTATTTTGACGGGTCGTG-ATTTAAAAGCTTGAGCGATACAG 156269
| | || || || || || ||||| || | |||||| | || | ||
Sbjct 490264 AAATTTGTGGTCCATTTACAATTTTAGGTTCTCTAGCATTTAACA-TTTTTCCTATTTGA 490206
Query 156270 CGAGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGT 156329
|| || ||||| |||||||| ||||| ||||| || | || | || | |||
Sbjct 490205 CGGGCTATTAAAGTTTTACCAGTACCAGGTGGTCCATAAAGTAAAATACCACGAACGTGT 490146
Query 156330 TTACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGA 156389
|| ||||||| |||| | ||| |||| | |||| | ||||||||||| |
Sbjct 490145 TTCATGCCTAATTGTTCAACTTGTTCAGGTGGAAATAATCTACTAAAAAATGCTCTTCTA 490086
Query 156390 AAAATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT 156447
|| ||| ||||||||||||||| || || || | ||||| ||||||| |||||
Sbjct 490085 AAGATGGCAGAAAATTCTTTATCTAAACCACCAATTCCCATACTTTCAAAATCCCAAT 490028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 667074074310600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |