Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 179 9e-40 >seq2 Length=16759152 Score = 179 bits (198), Expect = 9e-40 Identities = 164/207 (79%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || ||||| || ||||| |||||||| ||| || ||| Sbjct 10682517 CAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCCGAC 10682576 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| ||||||||| |||||||||||||| ||||| || || ||| Sbjct 10682577 ACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAA 10682636 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| || ||||||||||| |||||| | || ||||| || Sbjct 10682637 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAATATC 10682696 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| |||||||| || ||| | ||| Sbjct 10682697 CAAAAGGAATCAACTCTCCATTTGGTT 10682723 Score = 176 bits (194), Expect = 1e-38 Identities = 163/207 (79%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | |||||||| || || || || || || ||| || ||| Sbjct 10682973 CAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCCGAC 10683032 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| ||||||||| ||||| |||||||| ||||| || || ||| Sbjct 10683033 ACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAACAA 10683092 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||||||||| || ||||||||||| |||||| | || ||||| || Sbjct 10683093 AGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAATATC 10683152 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| |||||||| || ||| | ||| Sbjct 10683153 CAAAAGGAATCAACTCTTCATTTGGTT 10683179 Score = 167 bits (184), Expect = 6e-36 Identities = 161/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | ||||| ||||| ||||| || ||||| || || ||| Sbjct 10681605 CAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCCGAC 10681664 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||||||| |||||||||||||| ||||| || || || Sbjct 10681665 ACTATTGACAATGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAG 10681724 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| || ||||||||||| |||||| | || ||||| || Sbjct 10681725 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAATATC 10681784 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| |||||||| || ||| | ||| Sbjct 10681785 CAAAAGGAATCAACTCTCCATTTGGTT 10681811 Score = 163 bits (180), Expect = 7e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | ||||| ||||| || || || || || ||| || ||| Sbjct 10681833 CAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCTGAC 10681892 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| ||| ||||| || || |||||||||||||| ||||| ||| Sbjct 10681893 ACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAACAA 10681952 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| || |||||||||||||||||| | ||||| ||| | Sbjct 10681953 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAACATT 10682012 Query 178104 CAAAAAGAATCAACACTGCA 178123 |||||||| ||||| || || Sbjct 10682013 CAAAAAGAGTCAACTCTTCA 10682032 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | |||||||| || || || || || || ||| || ||| Sbjct 10682061 CAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCCGAC 10682120 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| ||| ||||| || || |||||||| || || || || ||| Sbjct 10682121 ACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAACAA 10682180 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||||||||| || ||||||||||| ||||| | || || || || Sbjct 10682181 AGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAATATC 10682240 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || || ||| | ||| Sbjct 10682241 CAAAAAGAATCTACTCTTCATTTGGTT 10682267 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | ||||| ||||| || || || || || ||| || ||| Sbjct 10682745 CAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCTGAC 10682804 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| |||||| || || || |||||||| ||||| ||||| ||| Sbjct 10682805 ACCATTGACAATGTCAAATCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAACAA 10682864 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| || ||||||||||| ||||| | ||||| || || Sbjct 10682865 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAATATC 10682924 Query 178104 CAAAAAGAATCAACACTGCA 178123 |||||||| ||||| || || Sbjct 10682925 CAAAAAGAGTCAACTCTTCA 10682944 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | ||||| ||||| || || || || || ||| || ||| Sbjct 10683201 CAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCTGAC 10683260 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||||||| || || |||||||||||||| || || ||| Sbjct 10683261 ACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAACAA 10683320 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || |||||||| || || || |||||||| || ||| | ||||| ||| | Sbjct 10683321 AGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAACATT 10683380 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 |||||||| ||||| || ||| | ||| Sbjct 10683381 CAAAAAGAGTCAACTCTTCATTTGGTT 10683407 Score = 136 bits (150), Expect = 1e-26 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | ||||| ||||| || || || || || ||| || ||| Sbjct 10682289 CAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCTGAC 10682348 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||||||| || || |||||||| ||||| || || ||| Sbjct 10682349 ACTATTGACAACGTTAAGTCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 10682408 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||||||||| || ||||||||||| ||||| | || || || || Sbjct 10682409 AGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAATATC 10682468 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||| || ||||| || || Sbjct 10682469 CAAAAGGAGTCAACTCTTCA 10682488 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || || || ||||| || ||||| || |||||| Sbjct 15965311 CAGATTTTCGTTAAGACTCTTACTGGTAAGACCATCACTCTTGAGGTCGAGCCATCAGAC 15965370 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| || ||||| ||||||||||||||||| || ||||| ||| Sbjct 15965371 ACCATCGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAACAA 15965430 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || ||||| Sbjct 15965431 CGTCTTATTTTTGCCGG 15965447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729117921190