Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq2 179 9e-40
>seq2
Length=16759152
Score = 179 bits (198), Expect = 9e-40
Identities = 164/207 (79%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||| | || ||||| || ||||| |||||||| ||| || |||
Sbjct 10682517 CAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCCGAC 10682576
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || ||| ||||||||| |||||||||||||| ||||| || || |||
Sbjct 10682577 ACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAA 10682636
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || || |||||||| || ||||||||||| |||||| | || ||||| ||
Sbjct 10682637 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAATATC 10682696
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| |||||||| || ||| | |||
Sbjct 10682697 CAAAAGGAATCAACTCTCCATTTGGTT 10682723
Score = 176 bits (194), Expect = 1e-38
Identities = 163/207 (79%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||| | |||||||| || || || || || || ||| || |||
Sbjct 10682973 CAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCCGAC 10683032
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || ||| ||||||||| ||||| |||||||| ||||| || || |||
Sbjct 10683033 ACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAACAA 10683092
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| ||||||||||| || ||||||||||| |||||| | || ||||| ||
Sbjct 10683093 AGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAATATC 10683152
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| |||||||| || ||| | |||
Sbjct 10683153 CAAAAGGAATCAACTCTTCATTTGGTT 10683179
Score = 167 bits (184), Expect = 6e-36
Identities = 161/207 (78%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||| | ||||| ||||| ||||| || ||||| || || |||
Sbjct 10681605 CAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCTTCCGAC 10681664
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || ||||| ||||||||| |||||||||||||| ||||| || || ||
Sbjct 10681665 ACTATTGACAATGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAG 10681724
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || || |||||||| || ||||||||||| |||||| | || ||||| ||
Sbjct 10681725 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAATATC 10681784
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| |||||||| || ||| | |||
Sbjct 10681785 CAAAAGGAATCAACTCTCCATTTGGTT 10681811
Score = 163 bits (180), Expect = 7e-35
Identities = 156/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || || | ||||| ||||| || || || || || ||| || |||
Sbjct 10681833 CAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCTGAC 10681892
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||||||| ||| ||||| || || |||||||||||||| ||||| |||
Sbjct 10681893 ACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAACAA 10681952
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || || |||||||| || |||||||||||||||||| | ||||| ||| |
Sbjct 10681953 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAACATT 10682012
Query 178104 CAAAAAGAATCAACACTGCA 178123
|||||||| ||||| || ||
Sbjct 10682013 CAAAAAGAGTCAACTCTTCA 10682032
Score = 152 bits (168), Expect = 1e-31
Identities = 158/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||| | |||||||| || || || || || || ||| || |||
Sbjct 10682061 CAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCCGAC 10682120
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || |||||| ||| ||||| || || |||||||| || || || || |||
Sbjct 10682121 ACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAACAA 10682180
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| ||||||||||| || ||||||||||| ||||| | || || || ||
Sbjct 10682181 AGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAATATC 10682240
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||||||||| || || ||| | |||
Sbjct 10682241 CAAAAAGAATCTACTCTTCATTTGGTT 10682267
Score = 145 bits (160), Expect = 2e-29
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || || | ||||| ||||| || || || || || ||| || |||
Sbjct 10682745 CAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCTTCTGAC 10682804
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || |||||| |||||| || || || |||||||| ||||| ||||| |||
Sbjct 10682805 ACCATTGACAATGTCAAATCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAACAA 10682864
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || || |||||||| || ||||||||||| ||||| | ||||| || ||
Sbjct 10682865 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAATATC 10682924
Query 178104 CAAAAAGAATCAACACTGCA 178123
|||||||| ||||| || ||
Sbjct 10682925 CAAAAAGAGTCAACTCTTCA 10682944
Score = 143 bits (158), Expect = 6e-29
Identities = 156/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || || | ||||| ||||| || || || || || ||| || |||
Sbjct 10683201 CAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCTGAC 10683260
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || |||||| ||||||||| || || |||||||||||||| || || |||
Sbjct 10683261 ACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAACAA 10683320
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || |||||||| || || || |||||||| || ||| | ||||| ||| |
Sbjct 10683321 AGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAACATT 10683380
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|||||||| ||||| || ||| | |||
Sbjct 10683381 CAAAAAGAGTCAACTCTTCATTTGGTT 10683407
Score = 136 bits (150), Expect = 1e-26
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || || | ||||| ||||| || || || || || ||| || |||
Sbjct 10682289 CAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCTGAC 10682348
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || ||||||||| || || |||||||| ||||| || || |||
Sbjct 10682349 ACTATTGACAACGTTAAGTCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 10682408
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| ||||||||||| || ||||||||||| ||||| | || || || ||
Sbjct 10682409 AGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAATATC 10682468
Query 178104 CAAAAAGAATCAACACTGCA 178123
||||| || ||||| || ||
Sbjct 10682469 CAAAAGGAGTCAACTCTTCA 10682488
Score = 116 bits (128), Expect = 9e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||||| || || || || ||||| || ||||| || ||||||
Sbjct 15965311 CAGATTTTCGTTAAGACTCTTACTGGTAAGACCATCACTCTTGAGGTCGAGCCATCAGAC 15965370
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || ||| || ||||| ||||||||||||||||| || ||||| |||
Sbjct 15965371 ACCATCGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAACAA 15965430
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || |||||
Sbjct 15965431 CGTCTTATTTTTGCCGG 15965447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203729117921190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |