Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 188 2e-42 seq129 86.0 1e-11 seq123 86.0 1e-11 seq82 86.0 1e-11 seq16 86.0 1e-11 >seq1 Length=5851329 Score = 188 bits (208), Expect = 2e-42 Identities = 293/414 (71%), Gaps = 5/414 (1%) Strand=Plus/Minus Query 61081 GAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAG 61140 || ||| |||||| || || || ||||| |||||||||||||||||||| ||||||| || Sbjct 4802391 GATTTTATCAAGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATCCCTCAAAAAG 4802332 Query 61141 AAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGA 61200 | | || || || ||||| || || || |||| || |||||| | |||||||| |||| Sbjct 4802331 AGACAACACCATTCTATCCACGAAGTCCATATGCAGTAGCAAAATTGTACGCTTATTGGA 4802272 Query 61201 TTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATC 61260 | |||||||| || || | |||||||| |||| || || |||| ||||||| Sbjct 4802271 TAATAAAAAATTATCGTGAAGCATATGGAATATTTGCTTGCAATGGTATTTTATTCAATC 4802212 Query 61261 ACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAA 61320 | || || | |||||| || | ||||| || | |||||||| | ||| || || | Sbjct 4802211 ATGAATCACCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGGGCTGTAGCTA 4802152 Query 61321 ATATTTTTAACGGTGTCGAAAAATGCATGTAT--CTAGGAAACATAGACTCTAAAAGAGA 61378 | || || ||||| || || ||| ||| || || || | || | ||| | || Sbjct 4802151 AAATCAGTATAGGTGTTCAAGAA-ACAT-TATTACTTGGTAATTTGGATGCCAAACGTGA 4802094 Query 61379 TTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCC 61438 |||||| ||||| | || ||| | || ||||||||| || | ||||| ||| || Sbjct 4802093 TTGGGGTCATGCGAAGGAGTATGTTGAAGCTATGTGGAGAATCCTTCAACATGATGAACC 4802034 Query 61439 AGATGACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATTC-GTAA 61491 |||||||| |||||||| || || | || |||||| | || ||| |||| Sbjct 4802033 AGATGACTTTGTTATTGCTACAGGTAAAACTCAAAGTGTCAGAGATTTCTGTAA 4801980 Score = 102 bits (112), Expect = 2e-16 Identities = 208/309 (67%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 281559 ggATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACC 281618 |||||||| | || || |||||| |||| | || || ||||| | |||||| ||| Sbjct 3117945 GGATTATAGTTAGGTATTTTAGTACTCCAAGCTGTGCCGATACCTTCAGCACCATTGACC 3118004 Query 281619 AAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATAC 281678 |||| | || || ||||| ||| ||||||||||||||||| | | || ||| || Sbjct 3118005 AAAACCATGGGAATGATAGGACAATACCATTCTGGTTCAATTTTTTGATTTTCTTCAAAC 3118064 Query 281679 AAATACTTCAGAAGGTTATCATCTGTATCGACGAAAACCTGTCGCGTCTTAGGGTTCAGT 281738 || | | |||| || ||||| | |||||| | | || |||| | ||| Sbjct 3118065 AAGAATCTGAGAACATTCTCATCATCTTGGACGAATAGAGTTTTAGTTACAGGGCTTAGT 3118124 Query 281739 TTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAAC 281798 | ||||| ||||| | | | || |||||||| || || || || | ||||| Sbjct 3118125 TGTGTGAAAATATAACGAGGAGAGGCAGAATCTTTACCTCCTTGAAGTCTAGTACCAAAT 3118184 Query 281799 TGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTG 281858 ||||| |||||||| ||||||| ||||| || || ||||||||||| | ||| Sbjct 3118185 TGACCAATGGGCAACAATAAGTTAATATTATTTGATCCAACATAATCCTGAGCTAAATTG 3118244 Query 281859 ACGATTGTC 281867 | || ||| Sbjct 3118245 ATAATAGTC 3118253 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 4550094 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 4550035 Query 165769 CCCC 165772 |||| Sbjct 4550034 CCCC 4550031 >seq129 Length=38826 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 7291 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 7232 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 7231 CCCGCATTGGGC 7220 >seq123 Length=56791 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 55873 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 55932 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 55933 CCCGCATTGGGC 55944 >seq82 Length=118425 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 21809 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 21750 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 21749 CCCGCATTGGGC 21738 >seq16 Length=715404 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 71572 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 71631 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 71632 CCCGCATTGGGC 71643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057816044171810