Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-32 >seq1 Length=5851329 Score = 154 bits (170), Expect = 2e-32 Identities = 400/606 (66%), Gaps = 14/606 (2%) Strand=Plus/Minus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095 ||| || || |||| ||||| | ||||||||| | | || ||||| || | || Sbjct 4934144 ATCGGCAACGTATTCGATATAATCACACATTAAACCTGAGTTCATTCCAATCATATCAAC 4934085 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 || ||||| | || | | ||| | || || ||| || |||||||| || || | Sbjct 4934084 AGGGAGAGCATCAGTAAGATATTCCTTCTCAATACTAACGGCATCTTTAATTATTTCTTT 4934025 Query 16156 GGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCA 16215 | ||| |||||| ||| | | | | || | |||| ||||| || || || | Sbjct 4934024 GATACGTTCTTCAGATGGTTTGTTCTCCAAGTAGCTGTACATAAGACATGCAAAATCACG 4933965 Query 16216 ATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCC 16275 ||||| || || |||| | || | || || || |||||||| ||||| || Sbjct 4933964 GTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTGTGTTAACCCAGGCATCAAGCC 4933905 Query 16276 TCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGA 16335 || ||||| | ||||||||| ||||||||||| || || |||||||| |||||||||| Sbjct 4933904 GCGCTTCTTAAGCCAGAATATGGCAGCAAATGAACCGGAGAAGAATATTCCCTCAACAGC 4933845 Query 16336 TGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTAC 16395 ||| ||||| |||| ||||| | | ||||||| ||||| | ||||||| | | | Sbjct 4933844 TGCGAAAGCAATTACGCGTTCTCCAAAAGTAGCATTTTTATCAGCAATCCATCTTAGAGC 4933785 Query 16396 CCATTCGGCTTTTTGTTTTAT-----ACAATCCATCGTTTCTATGGCCTTAAACAATTTC 16450 ||| || ||||| | | || ||| |||| | | | | ||| || Sbjct 4933784 CCAATCAGCTTTCTTCCTGATGAATGGGAATTCATC----CAAAGCATTGAAAAGCTTAT 4933729 Query 16451 TCTTTT--TCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508 || ||| ||||| || ||| || || || ||||| || ||||||||| | Sbjct 4933728 TCCTTTCATCCTG-ATCACGA--ATGTAAGTTTCAATAAGCTTTGAGTACATTTCACTAT 4933672 Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTT 16568 | || || || ||||| || || || || ||||| | || ||||| | | || |||| Sbjct 4933671 GAATATTTTCCATGGCAATTTGGAAACCGTAGAAAAAGCGTGCCTCAGGGACCTGAACTT 4933612 Query 16569 CCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACG 16628 || | |||| ||| | | ||||| || || ||||| || |||||||||||| | Sbjct 4933611 CCTTTGAGAATCTTTCAACTAAATTCTCGTTGACAATACCATCTGATGCAGCAAAAAAGG 4933552 Query 16629 CCAATA 16634 |||||| Sbjct 4933551 CCAATA 4933546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410647496840