Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq220 389 8e-104 >seq220 Length=3625 Score = 389 bits (430), Expect = 8e-104 Identities = 821/1220 (67%), Gaps = 21/1220 (2%) Strand=Plus/Minus Query 2286 ACGCCGAGGCCGAGGCCGGTTGCGTCAATGCCGATGTATTCGACGCTGTATTTCTCGGTC 2345 || ||| | || | |||||| | ||| |||||||| || ||| |||| | |||||| Sbjct 3562 ACCCCGTGACCAACGCCGGTCGAGTCGATGCCGATATAGGTCACGTTGTACTGTTCGGTC 3503 Query 2346 AGTTTGCGGATGCCATCTGCCTGCGCGGCAAAGTCCATGCCCTTCCACTGGTGGCGCTCC 2405 ||||| |||| | || ||||| ||| |||||||| || ||||||||| ||||| Sbjct 3502 AGTTTTTTGATGGCGTCAGCCTGGGCGCGGAAGTCCATCCCGCGCCACTGGTGACGCTCA 3443 Query 2406 AGCATGCGGAACTTGCCACCAGAAACCACCGGCGGCGCGAGCACGACGCACCCGGCGCTG 2465 || ||||||||||| || || | || | ||||| || | ||| ||||| ||||||||| Sbjct 3442 AGAATGCGGAACTTACCGCCCGGCACGGCTGGCGGTGCCACCACCACGCATCCGGCGCTG 3383 Query 2466 TCGCCAGTGTGTGA---------CGGGTCGTAGCCAATCCAGACGGGGCGAGAGCCGAAC 2516 ||||| | || | |||||| || || ||||| || ||| |||| ||| Sbjct 3382 TCGCCGTTTTGCGTACCTTTCGCCGGGTCATAACCGATCCACACTTCGCGCCAGCCAAAC 3323 Query 2517 GGATGGTCGGCGAACGGGGCGAAGTCCTCCCATTCTTCCATCACGTCGACCATGCAGCGC 2576 || | || | | ||||| ||| ||||| ||| |||||||| | Sbjct 3322 GGGCGCAGAGCCAGTGCATGAAAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCACGCC 3263 Query 2577 TGCAGCTCCTCGAACGGGAATACCGACGCTTTATCGTCGACAAACTCGCACATAAACAGG 2636 |||||||| || ||||||||| ||||| |||||| |||||||||||||| | |||| Sbjct 3262 TGCAGCTCGCTGAGCGGGAATACGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGG 3203 Query 2637 TTTTTAAAGTCCTCATCACTGTTTTCGCGTTTG-AGTTGGTCGAGGTCGAACAGGGTGCA 2695 || | | || | |||| || | | | | ||||| |||||||| ||| | || Sbjct 3202 TTCTGGTATTCGGCCGGGCTGTACTC-CATGCGCAACTGGTCAAGGTCGAAAAGGTTACA 3144 Query 2696 GCCACCGGCAAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCATCGTCGCAGAG 2755 || ||| | || || || | |||||| ||||| || | || || || |||| || Sbjct 3143 TCCGCCGCGCACTGCATCTTCCACGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAG 3084 Query 2756 CTGGCCACCGGCGAGCGCGCGGTGACTGATGTCAATTTCGATGCGGTCGGCAATACGGCT 2815 | |||| ||| || || ||| | ||| || || | ||||| | | | Sbjct 3083 CAGGCCGGGGGCCAGATTGCTGTGGGACAGGTCGATGTCCACCTTATCGGCTTT---GTT 3027 Query 2816 GCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTTGA 2875 |||||| |||||||||| | || |||||||| |||||||| | ||| | ||| | || Sbjct 3026 GCGCCCACGGTTGAACAGCGCACCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGA 2967 Query 2876 GGGTGTCGAAAAGTAGGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGAGGCGACTTT 2935 || || ||||| |||||| ||| | || || ||||| || || || ||||| Sbjct 2966 TGGCGTGGAAAAATAGGTTTGTCGCCATTTTTTGTGAATAGCCATACCGGAAGCCACTTT 2907 Query 2936 GCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATG 2995 |||||| | ||| || ||||| |||||||| ||||| | |||||| | |||| | | Sbjct 2906 GCGCAGTTCCTGGAATTTCGGTATCCAGAAATACTCATCCAGATACAGATTGCCGGTGTA 2847 Query 2996 GCTCTGAGCCGTGTTGGAGTTGGTACCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCAAT 3055 |||||| || ||| || ||||| ||||| || ||| | || ||||| || Sbjct 2846 GCTCTGGGCGGTGCGGGCATTGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTAGG---AAG 2790 Query 3056 GACAATCGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGCGCAAACTGTATGATGTATTC 3115 || ||||| ||||| |||| || || || || | || || | |||||||| | Sbjct 2789 CACCATCGGATCGCCTTTCAGCTCCACCTCGACTTCTTTGGCGAAGTCGATGATGTACTG 2730 Query 3116 GCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTT 3175 || |||| |||||| | |||||||| || || |||||||||||| | ||||| Sbjct 2729 CTTAAAAACGTGAGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTAAG 2670 Query 3176 GAGTGCTCGCAGCAGTGCCTCACGGGAAAAATAGAACGTCGCGCCAATCTGGCGGGATTT 3235 || || | ||| || ||||||| ||| || || |||||||| |||||||| || || Sbjct 2669 CAGGGCGTCAATCAGGGCTTCACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGACTT 2610 Query 3236 GAGAATGTCGCGAATACGGTGTGCCAGTCCTGCGCGGTACCACTGCAACTGGTACTCGAA 3295 || | || ||| || |||| | ||| || |||| || |||||| | ||| Sbjct 2609 CAGCAGGTTGCGGATGCGGTTGGTTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTGAA 2550 Query 3296 AGACTGGTCGAA--AAATAATTCCTCCAGCTTTTCGATAGCCTCGTCGCTGAAAAAATTC 3353 ||| ||| || | || |||||||| || || || ||| |||| | |||| Sbjct 2549 --CATGGAGGAATGGAAAATCTCTTCCAGCTTCTCAATCTGTTCATCGGTGAAGACATTC 2492 Query 3354 TTTTTCGGCTTCTTGCGCTCACCCTTGTTGCGGTTGGCGACGTTGGGGTTAAGGTCGGCC 3413 |||| ||| | |||| || |||||||||||||||||||| ||||| | |||||| Sbjct 2491 TTTTCCGGTTGACGGCGCGGGCCTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGCT 2432 Query 3414 TCGTTGCCGGTCTGGCTGTAGCGGTTAACGCGTGCCAGTCGTTCAATCTGCCGCCCGAGC 3473 ||||||||| | | | | | | || || | || || ||| ||| | ||| Sbjct 2431 TCGTTGCCGCCATTGTTAAACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCAGC 2372 Query 3474 AGGTCAATCTCTTTGAAGTC 3493 |||||||| |||||||| || Sbjct 2371 AGGTCAATTTCTTTGAAATC 2352 Score = 306 bits (338), Expect = 7e-79 Identities = 521/748 (70%), Gaps = 17/748 (2%) Strand=Plus/Minus Query 5174 CTCGACCTGTGGGCGCGTTTTCAGGACTTTCAGCGTCGTATTCGCGACGCCATTGTCCAG 5233 || |||||||||||||||| |||||| || |||| ||||| || ||||||| || | Sbjct 780 CTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTGCGTATCCGTAACGCCATCGTGAAA 721 Query 5234 CGTCAGGCACTGGATTTCATCATGGCCGGGTTTAACGGTACCACCCGCGCTGACACCTCT 5293 |||||||| ||||| ||||||| ||| |||||||| | || || | |||||| Sbjct 720 CGTCAGGCGCTGGACCGCATCATGATCGGCTTTAACGGCGTGAAGCGTGCGAAAACCTCT 661 Query 5294 GACCGTGTTAAAAACCCGATGCTGCAGGATGTGGCCGTTGGCTGGCTGCAGAAATACCGC 5353 ||||| |||||||| |||||||||||||| | ||||||||||||||| ||| Sbjct 660 AACCGTAGCGAAAACCCGCTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCGT 601 Query 5354 AATGAAGCCCCGGCGCGTGTGATGAGCAACATCACCGACGCTGACGGTAAAGTCGTTTCG 5413 | || || |||| | || ||| ||| || |||| ||| | |||| || | || Sbjct 600 GAGGATGCACCGGATCACGTCATGGGCAGCACCACC-ACG--GGCGGTGAAACCACACCG 544 Query 5414 GCAGTGATTCGCGTCGGTAAAAACGGCGACTATGAGAACCTCGACGCACTGGTGATGGAT 5473 | | | | ||||| ||| || || |||| ||||| ||||| ||||||||||| Sbjct 543 GGTGCGGTGAAAGTCGGGAAAGGTGGAGAATATGCCAACCTGGACGCCGTGGTGATGGAT 484 Query 5474 GGTACCAATACCCTGATTGACGAGATTTATCAGGATGACCCGAAACTCGTTGCCATCGTT 5533 | |||| || || |||| | | || ||||| || | || || | || | Sbjct 483 GCCGTCAATGAGCTTATCGACGTGGTCTACCAGGACGATGACGATCTGGTGGTGATTTGT 424 Query 5534 GGCCGTAAGCTGCTGGCCGACAAATATTTTCCGCTGGTCAACAAACAGCAGGAAAACACC 5593 || ||| |||||||| | ||||| ||||| ||||||||||||||| | |||||||||| Sbjct 423 GGTCGTGAGCTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGACCAGGAAAACAGT 364 Query 5594 GAGTCGCTCGCGGCGGATATCATCATCAGCCAGAAGCGCATCGGCAACCTGCCAGCCGTA 5653 || || || || ||||| |||||||| ||||| ||||| || ||||| ||||| Sbjct 363 GAAAAACTGGCTGCCGATATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAGGCCGTG 304 Query 5654 CGTGTGCCGTACTTCCCGGCGAACGCGGTGTTCGTGACCACGCTGGAAAACCTCTCTATC 5713 |||| ||||| ||||||| |||| ||| || | | ||| ||||| ||||| || || Sbjct 303 CGTGCGCCGTTCTTCCCGCCGAATGCGCTGCTGATCACCCGTCTGGATAACCTGTCCATT 244 Query 5714 TATTTCATGGATGAGAGCCACCGCCGCAGCATTGATGAAAACCCGAAAAAAGACCGCGTG 5773 || | ||| || | || |||||| || || ||||||||| ||||| | Sbjct 243 TACTGGCAGGAGGACACCCGCCGCCGTTCGGTTATCGACAACCCGAAACGTGACCGGATT 184 Query 5774 GAAAACTACGAGTCGATGAACATCGACTATGTGGTCGAGGCGTATGCCGCCG-GGTGC-C 5831 ||||||| || || | ||| | ||||||||| |||| || |||| | | || | Sbjct 183 GAAAACTTTGAATCCGTTAACGAAGCCTATGTGGTTGAGGACTA--CCGCTGCGCAGCAC 126 Query 5832 TGCTGGAAAACATCACCCTGGGCGATTTCACCGCACCTGCAGCACCGGAAGGCGGAGAGT 5891 || ||||||||||| | || || |||| ||| | ||| |||| ||||| || Sbjct 125 TGGTGGAAAACATCCAGATTGGTGACTTCAGCGCCGCCGCA------GAAGCCGGAGCGT 72 Query 5892 AAACCCATGA---CGAGCCCCGCACAGC 5916 ||||||||| ||| ||||||| || Sbjct 71 -AACCCATGAGCCTGAGTCCCGCACGGC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97874517748684