Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 >seq1 Length=5851329 Score = 113 bits (124), Expect = 4e-20 Identities = 266/397 (67%), Gaps = 6/397 (2%) Strand=Plus/Plus Query 18805 TTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATT 18864 ||||||| ||||| |||||||||||||| || |||||| | | | | | ||||| Sbjct 5221584 TTTACGGTTTCCAATGGAGACATTTTGGTGCTGAATATGAGGGAGTTGATGCCGACTAT- 5221642 Query 18865 TACAGCAA--GGAATCGATCAGCT-GCAAACTGTTATAGATACAATTAAAACAAACCCAG 18921 |||| || ||||| ||||| || ||| | |||||| ||| ||| |||| ||||| Sbjct 5221643 -ACAGGAAAAGGAATTGATCAACTAGCAGA-TGTTATTGATCAAATAAAAAACAACCCTT 5221700 Query 18922 AAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTAC 18981 || |||| || |||| ||||||||||| ||| | |||||| ||| Sbjct 5221701 CTTCAAGAAGAATTATCTTATCTGCTTGGAATCCATCTGATCTTGATAAAATGGTTTTAC 5221760 Query 18982 CTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTAT 19041 |||||||||| || | ||| ||||| ||| | | || || ||| || || | | Sbjct 5221761 CTCCATGTCATACACTTGTTCAATTTTATGTTCAAGATGGAGAGTTAAGTTGTCATTTGT 5221820 Query 19042 ACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTC 19101 | || | || ||| | || | || || || || ||||||||| ||| ||||| Sbjct 5221821 ATCAACGCAGTGGTGATGTCGGTTTGGGAGTTCCATTTAACATTGCTTCATACTCACTTA 5221880 Query 19102 TTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGG 19161 | ||| |||| | || | || ||| | | ||| || ||||| |||| || || | Sbjct 5221881 TGACCCACATGATTGCAAAAATTTGTGGAATAACAACTGGTGATTTTGTTCACACTATTG 5221940 Query 19162 GGGATGCACATATTTACTTGAATCATATAGATGCTTT 19198 | ||||| |||||||| || ||| | |||||||| Sbjct 5221941 GCGATGCTCATATTTATAAAAACCATGTTGATGCTTT 5221977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399501141923415