Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1 268 7e-67 >seq1 Length=5851329 Score = 268 bits (296), Expect = 7e-67 Identities = 499/727 (69%), Gaps = 7/727 (1%) Strand=Plus/Minus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTC 101592 ||| ||||||||| ||||||||||| ||| || | || || || || | ||||| | Sbjct 5222128 TTAGACAGCCATACTCATTTTAATTAAAGGATGAGATTTGTAATTCTCGAGAATAATATT 5222069 Query 101593 ATCTGCTTTAAAGTCATCAAT-GCATGAAACATTTC---TAGCAAATCTAAGTGTTGGAA 101648 ||| | |||| |||||||| | || || | || || ||||||||| |||||| | Sbjct 5222068 ATCGGAAGTAAAATCATCAATTGTATTCAAATTATCCCCTA-CAAATCTAATTGTTGGGA 5222010 Query 101649 ACGGTCTAGGAGT-TCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATG 101707 | || |||| | ||| ||||| || | | | |||||||| || | | ||| || Sbjct 5222009 ATGGG-TAGGGTTCTCGAGTCAATTGTTGTCTCAAAGCATCAACATGGTTTTTATAAATA 5221951 Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || ||||| || | ||| || |||| || | | | |||||| Sbjct 5221950 TGAGCATCGCCAATAGTGTGAACAAAATCACCAGTTGTTATTCCACAAATTTTTGCAATC 5221891 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 ||| || | ||| || || ||||||||||||||| ||||| || || | |||| | Sbjct 5221890 ATGTGGGTCATAAGTGAGTATGAAGCAATGTTAAATGGAACTCCCAAACCGACATCACCA 5221831 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACA 101887 | |||||||| ||||| | || |||||| |||||||||||| | | | Sbjct 5221830 CTGCGTTGATACAAATGACAACTTAACTCTCCATCTTGAACATAAAATTGAACAAGTGTA 5221771 Query 101888 TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATC 101947 ||||| || || || ||||||||| || || || |||||||||| | | | || Sbjct 5221770 TGACATGGAGGTAAAACCATTTTATCAAGATCAGATGGATTCCAAGCAGATAAGATAATT 5221711 Query 101948 CTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCT 102007 ||||| | |||||| ||||||| |||||| | | | || ||| |||| |||| Sbjct 5221710 CTTCTTGAAGAAGGGTTGTTTTTTATTTGATCAATAACATCTGCTAGTTGATCAATTCCT 5221651 Query 102008 TCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAAT 102067 | |||| |||| ||| |||| || | |||||| || || ||||| ||||| || || Sbjct 5221650 TTTCCTGTATAGTCGGCATCAACTCCCTCATATTCAGCACCAAAATGTCTCCATTGGAAA 5221591 Query 102068 CCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAAT 102127 || || |||||||| | ||| ||||| ||| ||| ||| || || |||| | |||| Sbjct 5221590 CCGTAAACAGGTCCTAAATCACCTTCTGGTCTTTCAGTAAATCCTAGACTATCGAGAAAT 5221531 Query 102128 GATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCA 102187 ||| |||||| ||||||||||| | || || || || ||||| | | Sbjct 5221530 TCCCTACTTCCATTTGCATCCCAAATTTTAACTCCTCGGGCGCTTAATTCTTTCGCATTA 5221471 Query 102188 GTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTA 102247 || ||| ||||||||||||||||||||||||| |||| ||||||| | | ||| Sbjct 5221470 GTGCTTCCCGAAATAAACCACAACAGTTCTTCAACAATACCTTTCCAAAAAGTTTTTTTA 5221411 Query 102248 GTAGTTA 102254 || |||| Sbjct 5221410 GTTGTTA 5221404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361248615586337