Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq220 450 3e-122 >seq220 Length=3625 Score = 450 bits (498), Expect = 3e-122 Identities = 886/1295 (68%), Gaps = 39/1295 (3%) Strand=Plus/Minus Query 1517 CGGCGGGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAA 1576 |||| ||| | |||| |||| || | | || ||| ||| | |||||| | || | Sbjct 3594 CGGCAGGAAAAAACGCTTTCACGTTCTCGTAAACCCCGTGACCAACGCCGGTCGAGTCGA 3535 Query 1577 TACCGATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGGGTGG 1636 | ||||| || |||||||| | |||||| ||||| ||||| || ||||||| | Sbjct 3534 TGCCGATATAGGTCACGTTGTACTGTTCGGTCAGTTTTTTGATGGCGTCAGCCTGGGCGC 3475 Query 1637 CAAAGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCA 1696 |||||||| || |||||||||||||||||| || | ||| || || || | ||| Sbjct 3474 GGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGAATGCGGAACTTACCGCCCGGCACGG 3415 Query 1697 CCGGCGGTGCCAGTACCACGCATCCGGCGCTGTCGCC---------ACGGTGTGACGGGT 1747 | |||||||||| ||||||||||||||||||||||| || | | ||||| Sbjct 3414 CTGGCGGTGCCACCACCACGCATCCGGCGCTGTCGCCGTTTTGCGTACCTTTCGCCGGGT 3355 Query 1748 CGTAACCAATCCATACCGGGCGGGAGCCGAACGGATTGGCGGCAAA--CGGCGCAT---A 1802 | ||||| ||||| || ||| |||| |||| ||| ||| | | | |||| | Sbjct 3354 CATAACCGATCCACACTTCGCGCCAGCCAAACG----GGC-GCAGAGCCAGTGCATGAAA 3300 Query 1803 GTCTTCCCATTCTT-CCAGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACA 1861 ||| ||| ||| ||||| |||| |||||||| |||||||| || |||||| | Sbjct 3299 GTCGGTCCAGACTTCCCAGC-TGTCCACCATGCACGCCTGCAGCTCGCTGAGCGGGAATA 3241 Query 1862 CCGATGCCTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGT 1921 | || || ||||| ||||| || ||||| | |||||| | | ||| | | ||||| Sbjct 3240 CGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGGTTCTGGTATTCGGCCGGGCTGT 3181 Query 1922 TTTCGCGTTTG-AGCTGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCA 1980 || | | | | ||| |||| |||||| || | || ||||| || || || || Sbjct 3180 ACTC-CATGCGCAACTGGTCAAGGTCGAAAAGGTTACATCCGCCGCGCACTGCATCTTCC 3122 Query 1981 ATGGTGACAATCTGTCGCCACTGGCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTA 2040 | |||||| ||||| || | || ||||| || || || || || ||| || | | Sbjct 3121 ACGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAGCAGGCCGGGGGCCAGATTGCTG 3062 Query 2041 TGACTGACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCA 2100 || | |||||| ||||| | |||| || ||| || ||||| ||||| || Sbjct 3061 TGGGACAGGTCGATGTCCAC---CTTATCGGCTTTGTTGCGCCCACGGTTGAACAGCGCA 3005 Query 2101 CCCGACCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAG 2160 || ||||||||||| || || ||| | ||| |||| || ||||| |||||||| Sbjct 3004 CCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGATGGCGTGGAAAAATAGGTTTGT 2945 Query 2161 CGCAGGTGACTCTGTGA--GGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCG 2218 ||| | | ||||| |||||||| || ||||| || |||||| |||| || |||| Sbjct 2944 CGCCATT--TTTTGTGAATAGCCATACCGGAAGCCACTTTGCGCAGTTCCTGGAATTTCG 2887 Query 2219 GGATCCAGAAAATCTCATCGACGTACAGGTCGCCGTTATGACTCTGCGCGGTGTTGGAGT 2278 | ||||||||| |||||| | ||||| | |||| | | ||||| |||||| || | Sbjct 2886 GTATCCAGAAATACTCATCCAGATACAGATTGCCGGTGTAGCTCTGGGCGGTGCGGGCAT 2827 Query 2279 TGGTGCCGAGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCA 2338 |||||||||| || || | || |||||| || || ||||| || || ||| Sbjct 2826 TGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTA---GGAAGCACCATCGGATCGCCTTTCA 2770 Query 2339 GGTCAACGTCAACCAGACGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGTG 2398 | || || || || ||| ||| |||||||||| | || || | ||||||| Sbjct 2769 GCTCCACCTCGACTTCTTTGGCGAAGTCGATGATGTACTGCTTAAAAACGTGAGCCTGTG 2710 Query 2399 TTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCT 2458 |||||||| || || |||||||||||| | ||||| |||||| | ||| || | Sbjct 2709 CCTTACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTAAGCAGGGCGTCAATCAGGGCTT 2650 Query 2459 CGCGGGAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGT 2518 | |||| ||| ||||| |||||||| |||||||| || ||||| | | ||||||||||| Sbjct 2649 CACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGACTTCAGCAGGTTGCGGATGCGGT 2590 Query 2519 GCTCAAGCCCGGCACGATACCAGTGCAGCTGATAGTCGAAAGACTGCTCAA-AGAAAATC 2577 ||||| ||||||| |||| |||| | || | | || ||||||| Sbjct 2589 TGGTTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTG-AACATGGAGGAATGGAAAATC 2531 Query 2578 TGCTCCAGCTTTTCGATGGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGCCGTCCG 2637 | |||||||| || || || || |||| | |||||||| ||||| || || | Sbjct 2530 TCTTCCAGCTTCTCAATCTGTTCATCGGTGAAGACATTCTTTTCCGGTTGACGGCGCGGG 2471 Query 2638 CCTTTGTTACGGTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGGCTGTAG 2697 |||||||| ||||| |||||||| || || | ||| || ||||||||| | | | | Sbjct 2470 CCTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGCTTCGTTGCCGCCATTGTTAAAC 2411 Query 2698 CGGTTGACCCGTGCCAGTCGTTCAATCTGGCGTCCCAGCAGGTCAATTTCCTTGAAGTCA 2757 | || ||| || | || || |||||| |||||||||||||||| ||||| || Sbjct 2410 TTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCAGCAGGTCAATTTCTTTGAAATCT 2351 Query 2758 CCGCCGGTTTTCTGTGGT--TTGATGATGAGCTGG 2790 || || | |||| | || || ||||||||| Sbjct 2350 TTCCC--TTCTTTGTGCTCCTTCATAATGAGCTGG 2318 Score = 381 bits (422), Expect = 1e-101 Identities = 541/757 (71%), Gaps = 28/757 (4%) Strand=Plus/Minus Query 4427 GCTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTCCGTATCCGTAACGCCATTATCAA 4486 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || Sbjct 781 GCTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTGCGTATCCGTAACGCCATCGTGAA 722 Query 4487 ACGCCAGTCCCTTGATTTCATCATGGCCGGTTTTAACGGCGTGAAGCGTGCCGAAACCTC 4546 ||| ||| | || || ||||||| ||| |||||||||||||||||||| ||||||| Sbjct 721 ACGTCAGGCGCTGGACCGCATCATGATCGGCTTTAACGGCGTGAAGCGTGCGAAAACCTC 662 Query 4547 TGACCGCAGCAGCAATCCGATGTTGCAGGATGTGGCGGTCGGCTGGCTGCAGAAATACCG 4606 | |||| ||| || ||| || ||||||||||| ||||||||||||||| ||| Sbjct 661 TAACCGTAGCGAAAACCCGCTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCG 602 Query 4607 CAATGAAGCACCGGCGCGCGTGATG---AGCAAGGTCACTGACGAGGAAGGCCGCACCAC 4663 | || ||||||| | ||| ||| |||| ||| | || ||| || |||| Sbjct 601 TGAGGATGCACCGGATCACGTCATGGGCAGCACCACCACGGGCGGTGAAA-CCACACCGG 543 Query 4664 CTCTGAGGTTATCCGCGTGGGTAAGGGCGGTGATTATGCCAGCCTTGATGCACTGGTGAT 4723 | | ||| | || || || || || || ||||||| ||| || || ||||||| Sbjct 542 GT--GCGGTGAAA---GTCGGGAAAGGTGGAGAATATGCCAACCTGGACGCCGTGGTGAT 488 Query 4724 GGATGCGACCAACAACCTGATTGAACCGTGGTAT--CAGGAAGACCCTGACCTTGTGGTG 4781 |||||| ||| | || || || |||||| | ||||| || || || |||||| Sbjct 487 GGATGCCGTCAATGAGCTTATCGA--CGTGGTCTACCAGGACGATGACGATCTGGTGGTG 430 Query 4782 ATTGTGGGGCGTCAGCTACTGGCGGACAAGTATTTCCCCATCGTCAACAAGGAGCAGGAC 4841 ||| || ||| |||| ||| | |||||||||||||| | |||||||| || ||||| Sbjct 429 ATTTGTGGTCGTGAGCTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGACCAGGAA 370 Query 4842 AACAGCGAAATGCTGGCCGCTGACGTCATCATCAGCCAGAAACGCATCGGTAACCTACCA 4901 ||||| |||| ||||| || || | |||||||| ||||||||||| ||| ||| | Sbjct 369 AACAGTGAAAAACTGGCTGCCGATATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAG 310 Query 4902 GCGGTACGCGTCCCGTACTTCCCGGCGGATGCGATGCTCATCACGAAGCTGGAAAACCTG 4961 || || || | |||| ||||||| || ||||| |||| ||||| ||||| |||||| Sbjct 309 GCCGTGCGTGCGCCGTTCTTCCCGCCGAATGCGCTGCTGATCACCCGTCTGGATAACCTG 250 Query 4962 TCCATCTACTACATGGATGACAGCCATCGCCGCGTGATTGAGGAAAACCCGAAACTCGAC 5021 ||||| |||| ||| |||| || ||||| | || || |||||||||| ||| Sbjct 249 TCCATTTACTGGCAGGAGGACACCCGCCGCCGTTCGGTTATCGACAACCCGAAACGTGAC 190 Query 5022 CGCGTGGAGAACTACGAGTCAATGAACATTGATTACGTGGTGGAAGACTACGCCGCCGGT 5081 || | || |||| || || | ||| | || ||||| || |||||| | || Sbjct 189 CGGATTGAAAACTTTGAATCCGTTAACGAAGCCTATGTGGTTGAGGACTACCGCTGCGCA 130 Query 5082 TGTCTGGTGGAAAAAATCAAGGTCGGTGACTTCTCCACACCGGCTAAGGCGACCGCAGAG 5141 ||||||||||| ||| || | ||||||||| | || ||||||| Sbjct 129 GCACTGGTGGAAAACATCCAGATTGGTGACTTC------------AGCGCCGCCGCAGAA 82 Query 5142 CCGGGAGCGTAACCGATGA---CGAGTCCCGCACAGC 5175 | ||||||||||| |||| ||||||||||| || Sbjct 81 GCCGGAGCGTAACCCATGAGCCTGAGTCCCGCACGGC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107375251522170