Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1 194 1e-44 >seq1 Length=5851329 Score = 194 bits (214), Expect = 1e-44 Identities = 481/726 (66%), Gaps = 7/726 (1%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 || |||||||| |||||| || ||| | || || || || || |||||||| | | Sbjct 5222127 TAGACAGCCATACTCATTTTAATTAAAGGATGAGATTTGTAATTCTCGAGAATAATATTA 5222068 Query 96958 TTTGCTTTAAAATCATCAATAG-ATGCAATCTTTCTGG--CAAACTTTAGTGTTGGGAAA 97014 | | ||||||||||||| | || ||| | || |||| | | ||||||||| Sbjct 5222067 TCGGAAGTAAAATCATCAATTGTATTCAAATTATCCCCTACAAATCTAATTGTTGGGAAT 5222008 Query 97015 GGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGA 97074 || ||| ||| || | || | | | | |||||||| || || |||||| ||| Sbjct 5222007 GGGTAGGGTTCTCGAGTCAATTGTTGTCTCAAAGCATCAACATGGTTTTTATAAATATGA 5221948 Query 97075 GCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATA 97134 ||||| || | |||||||| ||| || |||| || || | | || ||||| Sbjct 5221947 GCATCGCCAATAGTGTGAACAAAATCACCAGTTGTTATTCCACAAATTTTTGCAATCATG 5221888 Query 97135 CAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGAT 97194 || | || || || |||||||||||| || || || | || | |||| | Sbjct 5221887 TGGGTCATAAGTGAGTATGAAGCAATGTTAAATGGAACTCCCAAACCGACATCACCACTG 5221828 Query 97195 CTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGA 97254 | |||||| || ||||| | || |||||| |||||||| ||| | | |||| Sbjct 5221827 CGTTGATACAAATGACAACTTAACTCTCCATCTTGAACATAAAATTGAACAAGTGTATGA 5221768 Query 97255 CAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTT 97314 || || || || ||||||| || ||| | |||||||||| | | | |||||| Sbjct 5221767 CATGGAGGTAAAACCATTTTATCAAGATCAGATGGATTCCAAGCAGATAAGATAATTCTT 5221708 Query 97315 CTATCGGTTGGGTTTGTGTGTATGGTATTAATTA--TCTGCTTTAATTGATCAACGCCTT 97372 || | ||||| | | ||| || ||| | |||||| | |||||||| |||| Sbjct 5221707 CTTGAAGAAGGGTTGTTTTTTATTTGATCAATAACATCTGCT--AGTTGATCAATTCCTT 5221650 Query 97373 CTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATC 97432 ||| ||| | | | || || | |||||| || |||||||| ||||||||||| | Sbjct 5221649 TTCCTGTATAGTCGGCATCAACTCCCTCATATTCAGCACCAAAATGTCTCCATTGGAAAC 5221590 Query 97433 CATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGG 97492 | ||||||||||| | || |||||| ||| ||| || || || |||| | | | Sbjct 5221589 CGTAAACAGGTCCTAAATCACCTTCTGGTCTTTCAGTAAATCCTAGACTATCGAGAAATT 5221530 Query 97493 ACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAG 97552 |||| |||||||||||||||||| | || || || | ||||| | || Sbjct 5221529 CCCTACTTCCATTTGCATCCCAAATTTTAACTCCTCGGGCGCTTAATTCTTTCGCATTAG 5221470 Query 97553 TAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAG 97612 | ||| ||||||||||||| |||||| |||| |||| ||||||| | | |||| Sbjct 5221469 TGCTTCCCGAAATAAACCACAACAGTTCTTCAACAATACCTTTCCAAAAAGTTTTTTTAG 5221410 Query 97613 TTGTTA 97618 |||||| Sbjct 5221409 TTGTTA 5221404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346781519085590