Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 223 5e-53 seq4 127 3e-24 >seq1 Length=5851329 Score = 223 bits (246), Expect = 5e-53 Identities = 438/636 (69%), Gaps = 20/636 (3%) Strand=Plus/Minus Query 205329 TAATT-TTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGAT 205387 ||||| |||| ||||||| ||| || ||||||| | | || ||| || ||| | Sbjct 5222021 TAATTGTTGGGAATGGGTAGGGTTCTCGAGTCAATTGTTGTCTCAAAGCATCAACATGGT 5221962 Query 205388 TAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTA 205447 | ||| ||||| |||| |||||| | |||| ||| ||| | | ||| || | Sbjct 5221961 TTTTATAAATATGAGCATCGCCAATAGTGTGAACAAAATCACCAGTTGTTA--TTCCACA 5221904 Query 205448 AATGT--GCAATCATATAAGTCAATAA---ACTATAACTAGCAACATTAAATGGTACACC 205502 ||| | |||||||| | |||| ||| | ||| | ||||| |||||||| || || Sbjct 5221903 AATTTTTGCAATCATGTGGGTCA-TAAGTGAGTATGA--AGCAATGTTAAATGGAACTCC 5221847 Query 205503 TAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTAC 205562 ||||| | |||| | | |||||||| ||||| | | | | || | || | Sbjct 5221846 CAAACCGACATCACCACTGCGTTGATACAAATGACAACTTAACTCTCCATCTTGAA---C 5221790 Query 205563 ATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATT 205622 || |||||| |||| |||||| || |||| |||||| || |||| ||| ||||| Sbjct 5221789 ATAAAATTGAACAAGTGTATGACATGGAGGTAAAACCATTTTATCAAGATCAGATGGATT 5221730 Query 205623 CCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATG 205682 ||| || | ||| || || |||| || ||| || |||||||||| || |||| || Sbjct 5221729 CCAAGCAGATAAGATAATTCTTCTTGAAGAAGGGTTGTTTTTTATTTGATCAATAACATC 5221670 Query 205683 TGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACC 205742 || || |||||||| ||||| |||||| | | ||| | | ||||| |||||| Sbjct 5221669 TGCTAGTTGATCAATTCCTTTTCCTGTATAGTCGGCATCAACTCCCTCATATTCAGCACC 5221610 Query 205743 AAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAA 205802 |||||| | |||||| ||||| ||||| || ||||||||||||||| ||| ||| |||| Sbjct 5221609 AAAATGTCTCCATTGGAAACCGTAAACAGGTCCTAAATCACCTTCTGGTCTTTCAGTAAA 5221550 Query 205803 ACCACGtttttttatatatt--ttaatgatccattttcatcccaaatatggattccttta 205860 || | | | | | ||| || | ||||||| |||||||||| | | |||| Sbjct 5221549 TCCTAGACTATCGAGAAATTCCCTACT--TCCATTTGCATCCCAAATTTTAACTCCTCGG 5221492 Query 205861 ttttttaGAATATTT-GTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAAT 205919 ||| | | ||| | |||||| ||| || |||||||| || | |||||||||||| Sbjct 5221491 GCGCTTA-ATTCTTTCGCATTAGTGCTTCCCGAAATAAACCACAACAGTTCTTCAACAAT 5221433 Query 205920 TCCTCTCCAAAACATTGATTTTGTTGTAAATAATGG 205955 ||| ||||||| || ||| ||||| | ||| || Sbjct 5221432 ACCTTTCCAAAAAGTTTTTTTAGTTGTTATTAAGGG 5221397 Score = 132 bits (146), Expect = 7e-26 Identities = 380/579 (66%), Gaps = 24/579 (4%) Strand=Plus/Minus Query 202789 ACTCATATATCTAATTTTACCAAATATTGGTCTTTCTTT----CCATGCTCTATCATGAA 202844 ||||||| ||||||||| || | ||| ||||||||| || || || || || | Sbjct 3442914 ACTCATAGGTCTAATTTTTCCTATTATCTTTCTTTCTTTAAACCCTTGGTCCAT--TGCA 3442857 Query 202845 TACCACAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAAT 202904 |||||||| ||||||| || |||||| ||||||||| ||||| || ||| Sbjct 3442856 --CCACAAATACACCACATTATAGCAGTATATCCGTTTGGATCATTACCATCAATGGAAT 3442799 Query 202905 ATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGG-TGATTTTGTCCATTCT 202963 ||||||||||||| | ||||| ||||| || | || | |||||| | Sbjct 3442798 ATTTATCATTTAATTCAATGGTAATTTTCAATGCATCTTCAGGATCATCCT-TCCATTTT 3442740 Query 202964 AATAtttttttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATT 203023 | || || ||| ||||| |||||||||| || ||||| ||||| || | || | | Sbjct 3442739 AGTAATTGTTTTGCCCAGTACATTCTTACGTAACCATGAATTTTTCCTTTTATCAATAGC 3442680 Query 203024 TGTTTTTGTGATGCATTCCATAAATTGTCATGAGTTAATGCATTTTC-AAGT--TGATAT 203080 | |||||| | ||||||||| | | |||| ||| || ||| || | | | || Sbjct 3442679 TCTTTTTGAGCTGCATTCCAAAGTGTATCATTTGTTTTACCAGCTTCTAAATCCTCAGAT 3442620 Query 203081 AAACTATATATATGTTTTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAA 203140 | ||||| | | ||| ||||||| ||||||| || |||| | |||||||| Sbjct 3442619 GA---ATATACTTCATCTCTTTTATCATTCTTATGTTTGAGTAAAGTTTCTCTTGCCCAA 3442563 Query 203141 TTATTAGCACCATTTATATTATCGTAATTTTCATTATAATAACAAAAATTATCACATAGT 203200 ||| |||| || |||||||||||||| | || |||||| ||| || | Sbjct 3442562 GGCAAAGCTCCATCTAAATTATCGTAATTTTTCTCATGATAACAGTAATGTTCTGCAATC 3442503 Query 203201 TCTTTACGA-ATAATAGCTTCTTCACAAAAAACTTCTACCGATTTAGGATATAATTTTTT 203259 ||||| | | |||| |||| |||| | | | || || |||||| Sbjct 3442502 TCTTTCCAAGCGAATA----TTTCATTTAAAAATGATGATAAGTTTTCATCGTTTTTTTT 3442447 Query 203260 ATATTTGTTAATTTC---TAATATTATTCTTTGAGTTGAAATTTGACCAAAATGTATCCA 203316 | || ||| | ||||||||| |||||| ||||||||| ||| ||||| Sbjct 3442446 AAATCGTTTACAAGCCATAAATATTATTTTTTGAGAACTTATTTGACCAGTATGAATCCA 3442387 Query 203317 TGGTGATAAATTACTTATTGCATTAGCATTTGGATCATT 203355 ||||| ||||| ||| |||||| ||||||| | ||| Sbjct 3442386 AGGTGACAAATTGCTTTGTGCATTTTCATTTGGGTTATT 3442348 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| || |||| || ||||| |||||| | ||| |||| || Sbjct 5040550 ATGCAAATTTTCGTAAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAGGCCTCC 5040609 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || |||| |||| || || || || || ||||||||||| ||||| || || Sbjct 5040610 GATACTGTTGATAATGTTAAGACT-AAGATCCATGAAAAAGAAGGTATTCCACCAGACCA 5040668 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 |||| ||||||||||||| || Sbjct 5040669 ACAACGGCTTATTTTTGCCGG 5040689 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || || || ||||| ||| | || | || || Sbjct 5400305 AATGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGAGCCATC 5400364 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| ||||| ||||| ||||| |||||||| || ||||| || || Sbjct 5400365 AGATACCATCGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCAGACCA 5400424 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 |||| | ||||||||||| || Sbjct 5400425 ACAACGTCTTATTTTTGCCGG 5400445 >seq4 Length=2360143 Score = 127 bits (140), Expect = 3e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| ||| | ||||| | ||||||||||| || ||| | ||| | || | Sbjct 1035466 ACCATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCT 1035525 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||||||| || | || || |||||||| || || || || ||||| || Sbjct 1035526 TCTGATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGAC 1035585 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | || || || ||||||||| | |||||| | |||| | |||||| Sbjct 1035586 CAACAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTAT 1035645 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| | || |||||| | ||| | || || ||||| Sbjct 1035646 AATATTCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTCCGTGGAGGTAT 1035698 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | ||||||||||| || ||| | ||| | || | | Sbjct 1036153 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036212 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || | || || |||||||| ||||| || || ||||| || ||| Sbjct 1036213 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAA 1036272 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || ||||||||| | |||||| | |||| | ||||||||| Sbjct 1036273 CAAAGATTAATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036332 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || ||||| | || |||||| | ||| | || || ||||| Sbjct 1036333 ATTCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTTCGTGGAGGTAT 1036382 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||||||||| || ||| | ||| | || | | Sbjct 1035925 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035984 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || | || || |||||||| || ||||| || ||||| || ||| Sbjct 1035985 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAA 1036044 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || ||||||||| | |||||| | |||| | ||||||||| Sbjct 1036045 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036104 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || ||||| | || |||||| | ||| | || || ||||| Sbjct 1036105 ATTCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTTCGTGGAGGTAT 1036154 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||||||||| || ||| | ||| | || | | Sbjct 1036381 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036440 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | || || ||||||||||| ||||| || ||||| || ||| Sbjct 1036441 GATACAATTGACAATGTCAAGTCAAAGATTCAAGATAAGGAAGGAATCCCACCAGACCAA 1036500 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || ||||||||| | |||||| | |||| | ||||| || Sbjct 1036501 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036560 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| ||||| | || || ||| | ||| | || || ||||| Sbjct 1036561 ATCCAAAAAGAGTCAACCCTTCACTTAGTTCTTCGTCTCCGTGGAGGTAT 1036610 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | ||||||||||| || ||| | ||| | || | | Sbjct 1035697 ATGCAGATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035756 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || | || || |||||||| || || || || ||||| || ||| Sbjct 1035757 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1035816 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || ||||||||| | |||||| | |||| | ||||| || Sbjct 1035817 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTACAAC 1035876 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| ||||| | || |||||| | ||| | || || ||||| Sbjct 1035877 ATCCAAAAAGAGTCAACCCTTCACTTGGTTCTTCGTCTTCGTGGAGGTAT 1035926 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | ||||||||||| || ||| | ||| | || | | Sbjct 1036609 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036668 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || | || || |||||||| || || || || ||||| || ||| Sbjct 1036669 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1036728 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || ||||||||| | |||||| | |||| | ||||| || Sbjct 1036729 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036788 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || |||||||| ||||| | || |||||| | ||| | || || ||| Sbjct 1036789 ATCCAAAAAGAGTCAACCCTTCACTTGGTTCTTCGTCTCCGTGGAGGT 1036836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755450456841600