Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 >seq4 Length=2360143 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||||||||| |||||||||||| | ||| | |||||| Sbjct 1035905 ACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAAAGAGTTCTTCCATCCTCA 1035846 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || |||||||| ||| |||| | | || || || || || || |||||||||||| | Sbjct 1035845 AGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 1035786 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | || | || || | ||| ||||| | || | |||||| Sbjct 1035785 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1035726 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || |||||||||||||| Sbjct 1035725 CCTGTCAAAGTCTTAACAAAAATCTGCAT 1035697 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||||||||| ||||||||||| | ||| | |||||| Sbjct 1036817 ACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTCA 1036758 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || |||||||||||| |||| | | || || || || || || |||||||||||| | Sbjct 1036757 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 1036698 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | || | || || | ||| ||||| | || | |||||| Sbjct 1036697 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1036638 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || |||||||||||||| Sbjct 1036637 CCTGTCAAAGTCTTGACAAAAATCTGCAT 1036609 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| |||||||| || ||||| | ||| | |||||| Sbjct 1035677 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCCTCA 1035618 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || |||||||||||| |||| | | || || || || || || |||||||||||| | Sbjct 1035617 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 1035558 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | || | || || | ||| ||||| | || | |||||| Sbjct 1035557 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1035498 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || |||| ||| || |||||||| ||||||| Sbjct 1035497 CCTGTCAAAGTCTTAACAAAAATTTGCATGG 1035467 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| |||||||| || |||||| | ||| | |||||| Sbjct 1036133 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCA 1036074 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || |||||||||||| |||| | | || || || || || || || ||||||||| | Sbjct 1036073 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGA 1036014 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | || | || || | ||| ||||| | || | |||||| Sbjct 1036013 ATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1035954 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || || || |||||||| Sbjct 1035953 CCTGTCAAAGTCTTGACGAAGATCTGCAT 1035925 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | || ||||||||||| ||||||||||| | ||| | |||||| Sbjct 1036589 ACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTCA 1036530 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || |||||||| ||| |||| | | || || || || || || || ||||| ||| | Sbjct 1036529 AGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCTTGA 1036470 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | || | || || | ||| ||||| | || | |||||| Sbjct 1036469 ATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 1036410 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || || || |||||||| Sbjct 1036409 CCTGTCAAAGTCTTGACGAAGATCTGCAT 1036381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827296350204