Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4 84.2 3e-11 >seq4 Length=2360143 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||||||||| ||||||| ||||| | | || || || || || |||||||| Sbjct 1035660 CTCCTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAA 1035601 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | || || ||||| | || | | |||||||| | ||| | |||| |||| || Sbjct 1035600 GATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGT-CTTGAATCTTTGACTTGA-CG 1035543 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | || || | || || || | |||||||||||||| || | ||||| Sbjct 1035542 TTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTA 1035483 Query 43170 ACAAAGATTTGCAT 43183 ||||| |||||||| Sbjct 1035482 ACAAAAATTTGCAT 1035469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813404288360