Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1 113 7e-20 seq4 96.9 5e-15 >seq1 Length=5851329 Score = 113 bits (124), Expect = 7e-20 Identities = 241/353 (68%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 27933 TTGGGCAATATTAACTTTAGAAATACATAAAACTGATAAAAGAAATAAAATAT-TTAGTT 27991 |||||||| | ||||||| | |||||| | |||||||||| || || ||| || | Sbjct 3442563 TTGGGCAAGAGAAACTTTACTCAAACATAAGAATGATAAAAGAGATGAAGTATATTCATC 3442622 Query 27992 TACGAGAATTAGAGTATGGCAAAACAGATAATAAACTTTGGAATTATTGTCAATATTATT 28051 | | || ||||| ||| |||||| || ||| |||||||||| |||| | | Sbjct 3442623 TGAG-GATTTAGAAGCTGGTAAAACAAATGATACACTTTGGAATGCAGCTCAAAAAGAGC 3442681 Query 28052 TATTAAAATTTGGTTATCTTAATGGATATATGAGAATGTTTTGGGCaaaaaaaTTAATTG 28111 |||| | | || | || |||| || | ||||||| ||||||||| ||||| | Sbjct 3442682 TATTGATAAAAGGAAAAATTCATGGTTACGTAAGAATGTACTGGGCAAAACAATTACTAA 3442741 Query 28112 AATGGACTAATTCTCCTCAAGATGCCATCGATAAA-ACAATTTATCTTAATGATAAATAT 28170 |||||| || |||| ||||||| || || || || ||| | | |||||||||||| Sbjct 3442742 AATGGAAGGATGATCCTGAAGATGC-ATTGAAAATTACCATTGAATTAAATGATAAATAT 3442800 Query 28171 TTTTTCGATGGATATGATCCTATGGGATATGTTAATATATTATGGTCAATAGGAGGATTG 28230 | | ||||| ||||||| | |||||| | |||| | |||| || | || || Sbjct 3442801 TCCATTGATGGTAATGATCCAAACGGATATACTGCTATAATGTGGTGTATTTGTGG--TG 3442858 Query 28231 CA--TGACAGAGCATTCAAAGAAAGAGAAATGTATGGAAAAATAAGATTTATG 28281 || ||| || || ||||||||| | || |||||||| ||| |||| Sbjct 3442859 CAATGGACCAAGGGTTTAAAGAAAGAAAGATAATAGGAAAAATTAGACCTATG 3442911 >seq4 Length=2360143 Score = 96.9 bits (106), Expect = 5e-15 Identities = 144/210 (69%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | || || || ||| || ||||||||||| ||||||||||| | ||| || Sbjct 1035677 ACCAAGTGAAGGGTTGACTCCTTTTGA-ATATTATAATCAGAAAGAGTTCTTCCATCCTC 1035619 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||| || || |||||||| || || || || ||||| || || ||||| Sbjct 1035618 AAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1035559 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 ||||| ||| ||||| || || ||||| ||||| Sbjct 1035558 AATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1035499 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || |||| || |||||||| Sbjct 1035498 GCCTGTCAAAGTCTTAACAAAAATTTGCAT 1035469 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | || || || ||| || ||||||||||| ||||||||||| | ||| || Sbjct 1036133 ACCAAGTGAAGGGTTGACTCCTTTTGA-ATATTATAATCGGAAAGAGTTCTTCCATCCTC 1036075 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||| || || |||||||| || || || || |||||||| || ||||| Sbjct 1036074 AAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTG 1036015 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | || || || ||| || ||||||||||| ||||||||||| | ||| || Sbjct 1036361 ACCAAGTGAAGGGTTGACTCCTTTTGA-ATATTATAATCGGAAAGAGTTCTTCCATCCTC 1036303 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||||||| || || || |||||||| || || || |||||||| ||||| ||||| Sbjct 1036302 AAGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTGGAATTCCCTCTTTGTCTTG 1036243 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || ||||| ||||||||||| | ||| || | ||||||||| || || ||||||||| Sbjct 1036562 ATGTTGTAATCAGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTT 1036503 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || || || || || |||||||| |||||||| Sbjct 1036502 TGTTGGTCTGGTGGGATTCCTTCCTTATCTTG 1036471 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | || || ||||| || || ||||| ||||||||||| | ||| || Sbjct 1035905 ACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAAAGAGTTCTTCCATCCTCA 1035846 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||||||| || || ||||||||||| || || || || ||||| || || ||||| Sbjct 1035845 AGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1035787 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | || || ||||| || || ||||| ||||||||||| | ||| || Sbjct 1036817 ACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTCA 1036758 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||| || || |||||||| || || || || ||||| || || ||||| Sbjct 1036757 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1036699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743520944375040