Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1 176 4e-39 >seq1 Length=5851329 Score = 176 bits (194), Expect = 4e-39 Identities = 477/725 (66%), Gaps = 10/725 (1%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||| ||||||||| || |||| ||||||||||| ||||| ||||| | ||| | ||| Sbjct 4934270 TTTCTGATATTCAGATACCTTCTTCTCAAAGAAATTGGTTTTACCTTCAATTGAGAGATT 4934211 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062 ||||||||||||| || ||||| | | ||| || | || | ||| | ||| Sbjct 4934210 AACCATAAAATCAAATGGGTTTTTAGTATTATAAAGCTTTTGACAATTAAGTTCTACCAA 4934151 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 | ||| || || |||| ||||| | ||||||| | |||||||||| || | Sbjct 4934150 CAGGTGATCGGCAACGTATTCGATATAATCACACATTAAACCTGAGTTCATTCCAATCAT 4934091 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 | |||||||| || || || | | | | || || ||| |||| || || | ||||| Sbjct 4934090 ATCAACAGGGAGAGCATCAGTAAGATATTCCTTCTCAATACTAACGGCATCTTTAATTAT 4934031 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTTTAAT----AAGTGTTTAAACATTATACAAG 16238 ||| | | ||| | || | || ||||| | |||| | |||| | ||| | Sbjct 4934030 TTCTTTGA-TACGTTCTTCA---GATGGTTTGTTCTCCAAGTAGCTGTACATAAGACATG 4933975 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 ||||||||| || | || || || | |||||||| ||||| ||| | || | Sbjct 4933974 CAAAATCACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTGTGTTAACCCAG 4933915 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||| | || || || |||| ||| ||||| || ||||||||||| || |||||||| | Sbjct 4933914 GCATCAAGCCGCGCTTCTTAAGCCAGAATATGGCAGCAAATGAACCGGAGAAGAATATTC 4933855 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcc 16418 | ||||| || || || |||| | || || || | || ||||||| | |||| Sbjct 4933854 CCTCAACAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGCATTTTTATCAGCAATCC 4933795 Query 16419 attttttagcccaatttgcttt-ttgtttAACACAGTTCATGTTCTCTATTGCATTAAAT 16477 || || |||||||| ||||| || | | | | || | || | ||||| || Sbjct 4933794 ATCTTAGAGCCCAATCAGCTTTCTTCCTGATGAATGGGAAT-TCATCCAAAGCATTGAAA 4933736 Query 16478 AAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537 | | ||| |||| | ||| ||| ||||| || || || |||||||| Sbjct 4933735 AGCTTATTCCTTTCATCCTGATCACGAATGTAAGTTTCAATAAGCTTTGAGTACATTTCA 4933676 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597 ||||||||| ||||| || || || ||||| || || | | || || | | || Sbjct 4933675 CTATGAATATTTTCCATGGCAATTTGGAAACCGTAGAAAAAGCGTGCCTCAGGGACCTGA 4933616 Query 16598 ACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657 ||||| | || ||||| |||| || ||||| || || ||||| || |||||| Sbjct 4933615 ACTTCCTTTGAGAATCTTTCAACTAAATTCTCGTTGACAATACCATCTGATGCAGCAAAA 4933556 Query 16658 AACGC 16662 || || Sbjct 4933555 AAGGC 4933551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462508606318200