Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1 172 4e-38 >seq1 Length=5851329 Score = 172 bits (190), Expect = 4e-38 Identities = 410/620 (66%), Gaps = 0/620 (0%) Strand=Plus/Plus Query 20047 CCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTT 20106 |||||| |||| || ||| ||||||||||| |||||||||| | || |||||| Sbjct 5221397 CCCTTAATAACAACTAAAAAAACTTTTTGGAAAGGTATTGTTGAAGAACTGTTGTGGTTT 5221456 Query 20107 ATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCA 20166 ||| ||| || ||| | | || | | ||||||||| |||||| ||| Sbjct 5221457 ATTTCGGGAAGCACTAATGCGAAAGAATTAAGCGCCCGAGGAGTTAAAATTTGGGATGCA 5221516 Query 20167 CATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTG 20226 ||||| || | ||||| | | || |||||| | | | ||| || ||||| Sbjct 5221517 AATGGAAGTAGGGAATTTCTCGATAGTCTAGGATTTACTGAAAGACCAGAAGGTGATTTA 5221576 Query 20227 GGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACA 20286 || ||||| || || || ||||||||||||||||| |||||||||| | | | | Sbjct 5221577 GGACCTGTTTACGGTTTCCAATGGAGACATTTTGGTGCTGAATATGAGGGAGTTGATGCC 5221636 Query 20287 AATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAAC 20346 | ||| ||| ||||| | |||||| || | |||||||| || ||| |||| ||| Sbjct 5221637 GACTATACAGGAAAAGGAATTGATCAACTAGCAGATGTTATTGATCAAATAAAAAACAAC 5221696 Query 20347 CCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCT 20406 || ||||||||||| |||| || ||||| | ||| | | ||||| | Sbjct 5221697 CCTTCTTCAAGAAGAATTATCTTATCTGCTTGGAATCCATCTGATCTTGATAAAATGGTT 5221756 Query 20407 TTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466 || ||||||||||||| || |||||||| ||| || || || ||||| Sbjct 5221757 TTACCTCCATGTCATACACTTGTTCAATTTTATGTTCAAGATGGAGAGTTAAGTTGTCAT 5221816 Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCG 20526 |||||||||| | |||| | || |||| ||||| || || ||||| || | Sbjct 5221817 TTGTATCAACGCAGTGGTGATGTCGGTTTGGGAGTTCCATTTAACATTGCTTCATACTCA 5221876 Query 20527 CTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACC 20586 || | || | ||||||||| | || | ||| ||| ||||| || || ||||| Sbjct 5221877 CTTATGACCCACATGATTGCAAAAATTTGTGGAATAACAACTGGTGATTTTGTTCACACT 5221936 Query 20587 ATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGA 20646 || || || || |||||||| || ||| | || |||| | | ||| || || ||| Sbjct 5221937 ATTGGCGATGCTCATATTTATAAAAACCATGTTGATGCTTTGAGACAACAATTGACTCGA 5221996 Query 20647 CAACCAAAACAATTCCCAAC 20666 |||| | | ||||||||| Sbjct 5221997 GAACCCTACCCATTCCCAAC 5222016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399181144212715