Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1 251 7e-62 >seq1 Length=5851329 Score = 251 bits (278), Expect = 7e-62 Identities = 554/821 (67%), Gaps = 26/821 (3%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 || |||||| | ||||||| |||||| || || | | || || || || | ||| Sbjct 4934326 TAGAAATCAGCGTCTAACGTAAAAACGCGTTCCTCCTCTGTGGACATTACACCGAATTTC 4934267 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||||||| || | || |||||||| || ||||||||||| | ||| | ||| || Sbjct 4934266 TGATATTCAGATACCTTCTTCTCAAAGAAATTGGTTTTACCTTCAATTGAGAGATTAACC 4934207 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035 |||||||||||||| ||| | | || | | || | |||| ||||||| | | Sbjct 4934206 ATAAAATCAAATGGGTTTTTAGTATTATAAAGCTTTTGACAATTAAGTTCTACCAACAGG 4934147 Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095 ||| |||| | | || ||||| | | |||||||| | | ||||| || || | | Sbjct 4934146 TGATCGGCAACGTATTCGATATAATCACACATTAAACCTGAGTTCATTCCAATCATATCA 4934087 Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 14155 ||||| | || || | | |||| || || ||| || || || || || || Sbjct 4934086 ACAGGGAGAGCATCAGTAAGATATTCCTTCTCAATACTAACGGCATCTTTAATTATTTCT 4934027 Query 14156 GTAATAATTTCATTAGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAAT 14213 | ||| ||| | ||| || | || | | || | | || | ||| ||||||| Sbjct 4934026 TTGATACGTTCTTCAGATGGTT--TGTTCTCCAAGTAGCTGTACATAAGACATGCAAAAT 4933969 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 ||| || || |||||||||| ||| | || ||||| |||||| || ||||||| Sbjct 4933968 CACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTGTGTTAACCCAGGCATCA 4933909 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 | || || || || | ||| ||||| ||||| ||||| ||||| |||||||||||||||| Sbjct 4933908 AGCCGCGCTTCTTAAGCCAGAATATGGCAGCAAATGAACCGGAGAAGAATATTCCCTCAA 4933849 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393 | || || || || |||| ||||||||||| | || ||||| | | |||||| || Sbjct 4933848 CAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGCATTTTTATCAGCAATCCATCTTA 4933789 Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT-AAATAAATGT 14452 |||||| |||| ||| || | || || | | || | |||||| ||| | | Sbjct 4933788 GAGCCCAATCAGCTTTCTTCCTGATGAATGGGAATTCATCCAAAGCATTGAAAAGCTTAT 4933729 Query 14453 TCCTT--CTCTTTAGTACTTGAAATGTATGTATCAATAAG---TAAGCTATACATTTCAG 14507 ||||| || | | || |||||| || |||||||| | || ||||||||| Sbjct 4933728 TCCTTTCATCCTGATCAC---GAATGTAAGTTTCAATAAGCTTTGAG---TACATTTCAC 4933675 Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCATTG 14565 || || |||||||| || || || ||||| || ||| | | || || |||| || Sbjct 4933674 TATGAATATTTTCCATGGCAATTTGGAAACCGTAGAAAAAGCGTGCCTCAGGGACC--TG 4933617 Query 14566 ---TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622 | ||| |||| |||||||| | ||||| || || || |||||||| || || Sbjct 4933616 AACTTCCTTTGAG---AATCTTTCAACTAAATTCTCGTTGACAATACCATCTGATGCAGC 4933560 Query 14623 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14663 |||||| ||||||| || ||||||||| |||| |||| Sbjct 4933559 AAAAAAGGCCAATACTCTTGAAATAAAGTAACGCTCATCAT 4933519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482342060789160