Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 201 2e-46 >seq1 Length=5851329 Score = 201 bits (222), Expect = 2e-46 Identities = 391/570 (69%), Gaps = 8/570 (1%) Strand=Plus/Plus Query 35234 ACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGC 35293 || || || |||| ||| |||| ||| |||| |||||||| | |||||| || ||| Sbjct 5221406 ACAACTAAAAAAACTTTTTGGAAAGGTATTGTTGAAGAACTGTTGTGGTTTATTTCGGGA 5221465 Query 35294 AATACAGACGCCAAAGAATTG-GCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTC 35352 | || | || |||||||| || || || || | || ||| | || ||||| Sbjct 5221466 AGCACTAATGCGAAAGAATTAAGCGCCCGAGGAGTTAAA-ATTTGGGATGCAAATGGAAG 5221524 Query 35353 GCGGGAATTTTTGGACAGTAGAGGGTTATAC-GATAGAGCAGAGGGAGATTTGGGACCCG 35411 |||||||| | || ||| ||| || ||| || ||| |||| || ||||| ||||| | Sbjct 5221525 TAGGGAATTTCTCGATAGTCTAGGATT-TACTGAAAGACCAGAAGGTGATTTAGGACCTG 5221583 Query 35412 TATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATA 35471 | ||||| ||||||||| | |||||||||||||||||||| | | |||| |||| Sbjct 5221584 TTTACGGTTTCCAATGGAGACATTTTGGTGCTGAATATGAGGGAGTTGATGCCGACTATA 5221643 Query 35472 CTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC--CTGAGAGAAAATCCAGA 35529 | ||||| || ||||||||| | || | || || || | | | | | || || Sbjct 5221644 CAGGAAAAGGAATTGATCAACTAGC--AGATGTTATTGATCAAATAAAAAACAACCCTTC 5221701 Query 35530 TGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCC 35589 | ||||| || || | | || |||||||| |||||| | |||| | | || Sbjct 5221702 TTCAAGAAGAATTATCTTATCTGCTTGGAATCCATCTGATCTTGATAAAATGGTTTTACC 5221761 Query 35590 TCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTA 35649 |||||| || | || |||||||||||| ||||||| || || || ||||| Sbjct 5221762 TCCATGTCATACACTTGTTCAATTTTATGTTCAAGATGGAGAGTTAAGTTGTCATTTGTA 5221821 Query 35650 TCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCT 35709 ||| || || || |||||||| ||||| || || || || ||||| |||||||| ||| | Sbjct 5221822 TCAACGCAGTGGTGATGTCGGTTTGGGAGTTCCATTTAACATTGCTTCATACTCACTTAT 5221881 Query 35710 GACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGG 35769 ||| || |||| || | || || ||| | | || || ||| | | |||| |||| Sbjct 5221882 GACCCACATGATTGCAAAAATTTGTGGAATAACAACTGGTGATTTTGTTCACACTATTGG 5221941 Query 35770 TGACGCACACATTTATAATACCCACATTGA 35799 || || || |||||||| | ||| |||| Sbjct 5221942 CGATGCTCATATTTATAAAAACCATGTTGA 5221971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989576557400585