Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq220 282 1e-71 >seq220 Length=3625 Score = 282 bits (312), Expect = 1e-71 Identities = 796/1210 (66%), Gaps = 42/1210 (3%) Strand=Plus/Minus Query 2805 GCCGGTGGTGTCGACGCCGATGTAGGTGACCCAGTAGCGCTGGGTCACCTTGCGGATGAA 2864 |||||| | ||||| |||||| ||||| || ||| | | ||||| || |||| Sbjct 3548 GCCGGTCGAGTCGATGCCGATATAGGTCACGTTGTACTGTTCGGTCAGTTTTTTGATGGC 3489 Query 2865 CTCGGCCTGTTCGGCGAAGTCCTTGCCGCGGAATTGATGGCGCTCCAGCACGCGGAACTT 2924 || ||||| || ||||||| | ||||| | || || ||||| || | ||||||||| Sbjct 3488 GTCAGCCTGGGCGCGGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGAATGCGGAACTT 3429 Query 2925 GCCGCCCGGTACCGCCGGAGGCGCCACCACCACCAGACCCGCGGTGTCGCCCGTCT-CG- 2982 |||||||| || || || || ||||||||||| || ||| ||||||| | | || Sbjct 3428 ACCGCCCGGCACGGCTGGCGGTGCCACCACCACGCATCCGGCGCTGTCGCCGTTTTGCGT 3369 Query 2983 -------GCGGGGTCATAGCCCAGCCACACCTGGCGATCACCGAACGGCCGCAGCGCGAA 3035 || |||||||| || | |||||| | ||| || ||||| ||||| || | Sbjct 3368 ACCTTTCGCCGGGTCATAACCGATCCACACTTCGCGCCAGCCAAACGGGCGCAGAGCCAG 3309 Query 3036 CGGCTTGTAGTCCTCCGACCACAGGTCCCAGCTATCGACCATGCACGGCTGCAGCATGGT 3095 | | |||| | ||| | |||||||| || |||||||||| ||||||| | | Sbjct 3308 TGCATGAAAGTCG---GTCCAGACTTCCCAGCTGTCCACCATGCACGCCTGCAGCTCGCT 3252 Query 3096 CAACGGGAAAATGCTCGCGCCGTCGTCGACGAACTGGCACATCAGCAGGTTCTGGAAAGC 3155 | |||||| | | |||| ||||| || |||| ||||||||||||||||||| | | Sbjct 3251 GAGCGGGAATACGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGGTTCTGGTATTC 3192 Query 3156 CTCGGCGTCGTACTCGAGACGCAGCTCGTCGATGTCGAACAGATCGCAGCCACGGGCCTC 3215 | | | |||||| | |||| || ||| | |||||| || | || || | | | | Sbjct 3191 GGCCGGGCTGTACTCCATGCGCAACTGGTCAAGGTCGAAAAGGTTACATCCGCCGCGCAC 3132 Query 3216 GGCATCGAGGATGGTGACGATCTGGCGCCAGATGCGGTCCTCGCACAGTCGCCCTTGCTG 3275 ||||| | |||||| |||||||| | | ||| ||||||| | || | Sbjct 3131 TGCATCTTCCACGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAGCAGGCCGGGGGC 3072 Query 3276 CAGGGCGTCATGACTTACGTCGATCTTGATGCGATCGGCGGCCGGCTTGCCC-TTGTTGA 3334 ||| | || | |||||| | | |||||| | |||| ||||| Sbjct 3071 CAGATTGCTGTGGGACAGGTCGATGTCCACCTTATCGGC-TTTGTTGCGCCCACGGTTGA 3013 Query 3335 AGCGCTCGCCAGTCCAGAATGTGTAGGCCTCATGCGCCA---TCGAACTGGGCGTCGAGA 3391 | || | || | |||||| | || || || | || | || ||||| || | Sbjct 3012 ACAGCGCACCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGA---TGGCGTGGAAA 2956 Query 3392 AGTAGGTCCGGCGGTAGCGCTTCTGCATCGCCATACCGCTGGCGACCTTGTTCAGCTCCT 3451 | ||||| | || | || || || ||||||||| || || ||| ||| |||| Sbjct 2955 AATAGGTTTGTCGCCATTTTTTGTGAATAGCCATACCGGAAGCCACTTTGCGCAGTTCCT 2896 Query 3452 TGAACTTGAACGTCCAGAAGAACTCGTCGAAGTAGAAGTTGCCGTGGTAGCCCTGGGCAG 3511 ||| || ||||||| |||| || | || | |||||| ||||| |||||| | Sbjct 2895 GGAATTTCGGTATCCAGAAATACTCATCCAGATACAGATTGCCGGTGTAGCTCTGGGCGG 2836 Query 3512 TCCGCGCGTTGGTGCCGAGGAAGTGCAATTCCGCGCCGTTCGGCAGGATGATCGGGTCGC 3571 | || || |||||||||||||||| | || ||||| || || | ||||| |||| Sbjct 2835 TGCGGGCATTGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTAGGAAGCACCATCGGATCGC 2776 Query 3572 CCTTCAGTTCGACACCTACCGCATCGCGCGCGAAGGCCTGGATATACGCCTTGAAGATGT 3631 | ||||| || ||||| | | || |||||| | ||| ||| ||| || | || Sbjct 2775 CTTTCAGCTC--CACCT-CGACTTCTTTGGCGAAGTCGATGATGTACTGCTTAAAAACGT 2719 Query 3632 GCGCTTGGGCCTTGCTGGCCGACAGGAATATCTGGTTGCGCCCCGTTTCCAGCGCGTCGA 3691 | || || ||||| ||||| || ||||| |||||||| || || || ||| ||||| | Sbjct 2718 GAGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTAAGCAGGGCGTCAA 2659 Query 3692 TCAGCGCCTCGCGGGCGAAGTAGAACGTGGCGCCGATCTGCCGCGACTTGAGAATCACGC 3751 |||| || || ||||| ||||| || || ||||||||||| || ||||| || | || Sbjct 2658 TCAGGGCTTCACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGACTTCAGCAGGTTGC 2599 Query 3752 GGGTTCGCT---GATTACCCGCGCGGTACCAGTCTTTCTGGTAGTCGAAGCAACCGTCGA 3808 || | || | || || || |||||| |||||||| ||| | | || Sbjct 2598 GGATGCGGTTGGTTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTGAA-----CATGGA 2544 Query 3809 GGAAGG-----CCTCGACCAGTTTCTCGGTCAGTTCCTCACTGATGTCGTTGCGCTTCGG 3863 |||| | ||| |||| ||||| || |||| || ||| | | || | ||| | Sbjct 2543 GGAATGGAAAATCTCTTCCAGCTTCTCAATCTGTTCATCGGTGAAGACATT-CTTTTCCG 2485 Query 3864 CTTG-CGCTTGGGACCTTCGTTACGCTTGGCAAGCTCGGGGTTCAGGTCGGTTTCCGTAC 3922 ||| || || |||| ||| || ||||| | | ||||| | ||||| ||| | | Sbjct 2484 GTTGACGGCGCGGGCCTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGCTTCGTTGC 2425 Query 3923 CACCGCCCTGGTAGCGCTG--GATCCGCGCCTGGCGCTCAAGCTGCCGATGCAGCAGGTC 3980 | | | || || || ||||||||| |||||||| ||| || ||||||||| Sbjct 2424 CGC--CATTGTTAAACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCAGCAGGTC 2367 Query 3981 GATTTCCTTG 3990 ||||| ||| Sbjct 2366 AATTTCTTTG 2357 Score = 107 bits (118), Expect = 4e-19 Identities = 475/736 (65%), Gaps = 47/736 (6%) Strand=Plus/Minus Query 5536 TACGAGTGCAAGCACACCGACTTCGACACCGCAATCACCTACGCCATGCTCGACGCCTGG 5595 ||| | ||| | || ||| |||| || || | | |||||||| | ||| ||| ||| Sbjct 828 TACAAATGCGAACAGACCAACTTTGATACGGTGCTGACCTACGCGAAGCTGGACCTGTGG 769 Query 5596 GCCAAGTTCCCCGAGTTCCAGGCCCTGC---TGCGCGACGCGATCCTCAAGCGCCAGGCC 5652 || | | || |||||| |||| | || |||| ||| | || || ||||| Sbjct 768 GCGCGTTATCAGGATTTCCAG---CTGCGTATCCGTAACGCCATCGTGAAACGTCAGGCG 712 Query 5653 CTCGACCGCCTGATGATCGGCTTCAACGGCACCA-GCGCCGCGGCTACCACCAACCGCGC 5711 || |||||| | ||||||||||| |||||| | ||| ||| ||| | ||||| Sbjct 711 CTGGACCGCATCATGATCGGCTTTAACGGCGTGAAGCGT-GCGAAAACCTCTAACCGTAG 653 Query 5712 CGCCAACCCGCTGCTGCAGGACGTGAACATTGGCTGGTTCCAGCAGTACCGCAACAACGC 5771 || ||||||||||||||||| ||||||| |||||| | ||| | ||| | | || Sbjct 652 CGAAAACCCGCTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCGTGAGGATGC 593 Query 5772 TCCGGCACGGGTACTG------------AAGGAAGGGAAGACCACC---GGCAAGGTGGT 5816 |||| | || || | || || | ||||| || |||| Sbjct 592 ACCGGATCACGTCATGGGCAGCACCACCACGGGCGGTGAAACCACACCGGGTGCGGTGAA 533 Query 5817 AGTCGGCAACGGCGCCGACGCCGACTACAAGAACCTCGACGCCCTGGTGTTCGACGTGGT 5876 |||||| || || | || || || ||||| |||||| ||||| | || | || Sbjct 532 AGTCGGGAAAGGTG--GA----GAATATGCCAACCTGGACGCCGTGGTGATGGATGCCGT 479 Query 5877 CAGCAGCCTGATCGATCCCTGGC--ACC--GCCG-TGACCCGGGCCTGGTGGTGATCCTC 5931 || || ||||| | ||| ||| | || |||| | ||||||||||| Sbjct 478 CAATGAGCTTATCGA--CGTGGTCTACCAGGACGATGAC---GATCTGGTGGTGATTTGT 424 Query 5932 GGCCGCGAGCTGGTCCACGACAAGTACTTCCCGATGGTGAACAAGGACCAGCCGGCAACC 5991 || || |||||| | |||||||| |||||| |||| ||||| |||||| | ||| Sbjct 423 GGTCGTGAGCTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGACCAG--GAAAACA 366 Query 5992 GAGAAGA--TCGCCACCGACCTCATCCTGTCGCAGAAGCGCATGGGCGGCCTGCCGCCGG 6049 | ||| | | || |||| | ||| | ||||| |||||||| ||||||| | | | Sbjct 365 GTGAAAAACTGGCTGCCGATATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAGGCCG 306 Query 6050 TGGAAGTGCCCTACGTGCCCGAGAAGGGCCTCATGGTCACCACCCTGAAGAACCTGTCGC 6109 || | ||| | | | || ||| | || || ||||| ||| | |||||||| Sbjct 305 TGCGTGCGCCGTTCTTCCCGCCGAATGCGCTGCTGATCACCCGTCTGGATAACCTGTCCA 246 Query 6110 TCTACTGGCAGATCGGCGGTCGCCGCCGCTACCTGAAGGAGGTACCGGAGAAG-AACCGC 6168 | ||||||||| | | |||||||| | | | || ||| || | | |||| Sbjct 245 TTTACTGGCAGGAGGACACCCGCCGCCGTTCGGTTATCGA-CAACCCGAAACGTGACCGG 187 Query 6169 ATCGAGAACTACGAGTCCAGCAACGACGCCTACGTCGTCGAGGACTACGGCCTCGGCTGC 6228 || || |||| || ||| ||||| ||||| || || ||||||||| | || || || Sbjct 186 ATTGAAAACTTTGAATCCGTTAACGAAGCCTATGTGGTTGAGGACTACCG-CTGCGCAGC 128 Query 6229 -CTGGTCGAGAACATC 6243 ||||| || |||||| Sbjct 127 ACTGGTGGAAAACATC 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113733607200148