Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 seq233 89.7 5e-13 >seq4 Length=2360143 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||||||||||| || ||||||||||| ||||| ||||| Sbjct 1036607 CCTCCACGGAGACGAAGAACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAA 1036548 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || || ||||| || || |||||| | ||| || || || || Sbjct 1036547 AGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGG 1036488 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | |||| || | | || | ||| || | ||||| || Sbjct 1036487 ATTCCTTCCTTATC-TTGAATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCTAC 1036429 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| || | || ||||| ||||| || || ||||| || |||||| || Sbjct 1036428 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCATACCT 1036377 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||||||||| ||||| |||||| Sbjct 1035923 CCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAA 1035864 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || || ||||| || || |||||| | ||| || || || || Sbjct 1035863 AGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGG 1035804 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| | |||| || | | || | ||| || | ||||| || Sbjct 1035803 ATTCCCTCCTTGTC-TTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTAC 1035745 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| || | || ||||| ||||| || || || || || |||||| || Sbjct 1035744 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATCTGCATACCT 1035693 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||||||||| ||||| ||||| Sbjct 1036835 CCTCCACGGAGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAA 1036776 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || || ||||| ||||| |||| | | ||| || || || || Sbjct 1036775 AGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGG 1036716 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| | |||| || | | || | ||| || | ||||| || Sbjct 1036715 ATTCCCTCCTTGTC-TTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTAC 1036657 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| || | || ||||| ||||| || || || || || |||||| || Sbjct 1036656 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCATACCT 1036605 >seq233 Length=3140 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 6/111 (5%) Strand=Plus/Plus Query 153450 AATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttt 153509 |||||||| ||||||||||||| ||||| ||||| || || || | ||||||||||||| Sbjct 1566 AATGCATCTGCCAAACCTTGAACACCAATACCTATTGGTCGGTGTCTCATATTAGATTTT 1625 Query 153510 tttGCAGCTTC---AACAGGATAGAAATTGCGGTCGATAATTTTATTTAAA 153557 || |||||| ||| || || |||| |||||||| ||||||||| Sbjct 1626 TT---AGCTTCCGGAACTGGGTAATAATTCACATCGATAATCTTATTTAAA 1673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060360130400